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1. fRank fRank Public

   This R script is designed to process and annotate transcription start site (TSS) data obtained from TSSpredator pipeline. ranking them based on enrichment factors and step heights. The script proce…

   R

2. Principal-Component-Analysis Principal-Component-Analysis Public

   Performs Principal Component Analysis (PCA) on gene expression count data generated by `featureCounts`. It processes multiple `.txt` files from a specified directory, merges the data, and generates…

   R

3. Transcriptomic-Feature-Annotator-RNA-Folding-Analyzer Transcriptomic-Feature-Annotator-RNA-Folding-Analyzer Public

   This script processes genomic and transcriptomic data, extracts upstream sequences, predicts RNA folding patterns, identifies U-track-rich regions, annotates genomic features (e.g., UTRs, loci), an…

   R

4. BAM-to-BEDGraph-and-BED-Conversion-Pipeline BAM-to-BEDGraph-and-BED-Conversion-Pipeline Public

   This script automates the processing of BAM files to generate strand-specific, normalized BEDGraph files and convert BAM files to BED format. It calculates total mapped reads for normalization (RPM…

   Shell

5. Rosalind Rosalind Public

   Python