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<title>Edward Ionides: Publications</title>
<h2><a href="http://www.stat.lsa.umich.edu/~ionides/">Edward Ionides</a>: Publications
<h2><a href="http://www.stat.lsa.umich.edu/~ionides/">E. L. Ionides</a>: Publications
</h2>
<a href="https://scholar.google.com/citations?user=HNH5jqAAAAAJ&hl=en">Citation statistics from Google Scholar</a>.
<dl>
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<p>
<dt>
<span style="font-variant: small-caps;">Breto, C., Wheeler, J., King, A. A., and Ionides, E. L. </span> (2024).
A tutorial on panel data analysis using partially observed Markov processes via the R package panelPomp
A tutorial on panel data analysis using partially observed Markov processes via the R package panelPomp.
<a href="https://arxiv.org/abs/2409.03876"><i>arxiv:2409.03876</i></a>.
<!-- <a href="https://doi.org/10.48550/arXiv.2409.03876">doi</a>. -->
Article source code included in the R package on
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<a href="https://zenodo.org/records/10149233">Zenodo</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Wheeler, W. and Ionides, E. L. </span> (2023).
<span style="font-variant: small-caps;">Wheeler, W. and Ionides, E. L. </span> (2024).
Likelihood Based Inference for ARMA Models.
<a href="https://arxiv.org/abs/2310.01198"><i>arxiv:2310.01198</i></a>.
R package arima2 on <a href="https://github.com/jeswheel/arima2"> GitHub</a>
<a href="https://arxiv.org/abs/2310.01198v4"><i>arxiv:2310.01198v4</i></a>.
R package arima2 on <a href="https://github.com/jeswheel/arima2">GitHub</a>
and
<a href="https://cran.r-project.org/web/packages/arima/index.html">CRAN</a>.
<!--
Source code on <a href="https://github.com/jeswheel/arima2_article">GitHub</a>.
-->
<a href="https://cran.r-project.org/web/packages/arima/index.html">CRAN</a>.
<!--
Article source code on <a href="https://github.com/jeswheel/arima2_article">GitHub</a>.
-->
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L., Ning, N. and Wheeler, J. </span>(2024). An iterated block particle filter for inference on coupled dynamic systems with shared and unit-specific parameters.
<i>Statistica Sinica</i> <b>34</b> 1145-1166.
<a href="https://doi.org/10.5705/ss.202022.0188">doi</a>.
<a href="https://arxiv.org/abs/2206.03837"><i>arxiv</i></a>.
<a href="https://github.com/ionides/ibpf_article">Source code</a>.
<p>
<dt>
<span style="font-variant: small-caps;"> Ionides, E. L., Asfaw, K., Park, J., and King, A. A. </span> (2023).
Bagged filters for partially observed interacting systems.
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<a href="https://www.jmlr.org/papers/volume24/21-1253/21-1253.pdf">pdf</a>.
<a href="https://arxiv.org/abs/2110.10745v3"><i>arxiv</i></a>.
<a href="https://kidusasfaw.github.io/spatPomp/vignettes/ibpf.pdf">Tutorial</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L., Ning, N. and Wheeler, J. </span>(2022). An iterated block particle filter for inference on coupled dynamic systems with shared and unit-specific parameters.
<i>Statistica Sinica</i>, prepublished online.
<a href="https://doi.org/10.5705/ss.202022.0188">doi</a>.
<a href="https://arxiv.org/abs/2206.03837"><i>arxiv</i></a>.
<a href="https://github.com/ionides/ibpf_article">Source code</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L. and Ritov, Y. </span>(2022). The scientific method and p-values: Response to Mayo (2022).
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<i>American Journal of Epidemiology</i> <b>177</b> 1236-1245.
<a href="http://dx.doi.org/10.1093/aje/kws378">doi</a>.
<p>
<span style="font-variant: small-caps;">Ionides, E. L.</span> (2012).
Comment: Cell motility models and inference for dynamic systems.
<i>Journal of the American Statistical Association</i> <b>107</b> 865-868.
<a href="http://dx.doi.org/10.1080/01621459.2012.713877">doi</a>.
<p>
<span style="font-variant: small-caps;">Chuang, T., Ionides, E. L., Knepper, R. G., Stanuszek, W. W., Walker, E. D. and Wilson, M. L.</span> (2012).
Cross-correlation map analyses show weather variation influences on mosquito abundance patterns in Saginaw county, Michigan, 1989-2005.
<i>Journal of Medical Entomology</i> <b>49</b> 851-858.
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Journal of Health Economics <b> 27 </b> 544-563.
<a href="http://hdl.handle.net/2027.42/56220">Supplement and pdf</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L.</span> (2007). <i>
Discussion of ``Parameter Estimation for Differential Equations: A Generalized Smoothing Approach,''
</i> (by J. O. Ramsay, G. Hooker, D. Campbell and J. Cao). Journal of the Royal Statistical Society, Series B (Statistical Methodology)
<b>69</b> 783-784.
<a href="http://dx.doi.org/10.1111/j.1467-9868.2007.00610.x">doi</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L., Breto, C. and King, A. A.</span> (2007).
<i> Modeling Disease Dynamics: Cholera as a Case Study</i>. Statistical Advances in the Biomedical Sciences, Chapter 8 (pp. 123-140). Edited by A. Biswas, S. Datta, J. Fine and M. Segal. Wiley, Hoboken NJ.
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</dl>

<h2>Published commentaries </h2>

<dl>
<dt>
<span style="font-variant: small-caps;">
Frey, K., Ionides, E. L., and Wheeler, J.
</span> (2024).
Reviews of "Efficacy, Public Health Impact and Optimal Use of the Takeda Dengue Vaccine."
<i>Rapid Reviews Infectious Diseases</i>.
<a href="https://doi.org/10.1162/2e3983f5.5e9d4a0f">doi</a>.
<p>
<dt>
<span style="font-variant: small-caps;">
Ionides, E.L.
</span> (2020).
Peer review report for "Reproducible parallel inference and simulation of stochastic state space models using odin, dust, and mcstate " [version 1; peer review].
<i> Wellcome Open Reseach</i> <b>5</b> 288.
<a href="https://doi.org/10.21956/wellcomeopenres.18131.r42058">doi</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L.</span> (2012).
Comment: Cell motility models and inference for dynamic systems.
<i>Journal of the American Statistical Association</i> <b>107</b> 865-868.
<a href="http://dx.doi.org/10.1080/01621459.2012.713877">doi</a>.
<p>
<dt>
<span style="font-variant: small-caps;">Ionides, E. L.</span> (2007).
Discussion of "Parameter Estimation for Differential Equations: A Generalized Smoothing Approach" (by J. O. Ramsay, G. Hooker, D. Campbell and J. Cao).
<i> Journal of the Royal Statistical Society, Series B (Statistical Methodology)</i> <b>69</b> 783-784.
<a href="http://dx.doi.org/10.1111/j.1467-9868.2007.00610.x">doi</a>.
<p>

</dl>

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