Replace pandas append #180
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [master, develop, rc] | |
| pull_request: | |
| branches: [master, develop, rc] | |
| jobs: | |
| build_reqs: | |
| name: build (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["windows-latest"] | |
| python-version: ["3.8"] | |
| steps: | |
| - name: Checkout iblrig repo | |
| uses: actions/checkout@v3 | |
| with: | |
| path: iblrig | |
| - name: Checkout iblpybpod repo | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: int-brain-lab/iblpybpod | |
| path: iblpybpod | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: flake8 | |
| shell: pwsh -l {0} | |
| run: | | |
| pwd | |
| ls | |
| pip install flake8 --quiet | |
| cd iblrig | |
| python -m flake8 | |
| - name: iblrig_params.yml generation for ci | |
| shell: pwsh -l {0} | |
| run: | | |
| Get-ChildItem | |
| Get-ChildItem "iblrig" | |
| $root_loc = Get-Location | |
| $iblrig_loc = [IO.Path]::Combine($root_loc, "iblrig") | |
| $iblrig_local_data_loc = [IO.Path]::Combine($root_loc, "iblrig_data") | |
| $iblrig_remote_data_loc = [IO.Path]::Combine($root_loc, "iblrig_remote_data") | |
| $iblrig_params_loc = [IO.Path]::Combine($root_loc, "iblrig_params") | |
| $iblrig_temp_alyx_loc = [IO.Path]::Combine($root_loc, "alyx_proj_data") | |
| Write-Output "root_loc - $root_loc" | |
| Write-Output "iblrig_loc - $iblrig_loc" | |
| Write-Output "iblrig_local_data_loc - $iblrig_local_data_loc" | |
| Write-Output "iblrig_remote_data_loc - $iblrig_remote_data_loc" | |
| Write-Output "iblrig_params_loc - $iblrig_params_loc" | |
| Write-Output "iblrig_temp_alyx_loc - $iblrig_temp_alyx_loc" | |
| New-Item $iblrig_local_data_loc -ItemType Directory | |
| New-Item $iblrig_remote_data_loc -ItemType Directory | |
| New-Item $iblrig_temp_alyx_loc -ItemType Directory | |
| cd iblrig | |
| $filename = "iblrig_params_ci.yml" | |
| New-Item $filename -ItemType File -Value ("# parameter file generated for github actions ci" + [Environment]::NewLine) | |
| Add-Content $filename "iblrig_local_data_path: '$iblrig_local_data_loc'" | |
| Add-Content $filename "iblrig_remote_data_path: '$iblrig_remote_data_loc'" | |
| Add-Content $filename "iblrig_remote_server_path: '$iblrig_remote_data_loc'" | |
| Add-Content $filename "iblrig_path: '$iblrig_loc'" | |
| Add-Content $filename "iblrig_params_path: '$iblrig_params_loc'" | |
| Add-Content $filename "iblrig_temp_alyx_path: '$iblrig_temp_alyx_loc'" | |
| Get-Content $filename | |
| - name: iblrig installation | |
| shell: pwsh -l {0} | |
| run: | | |
| pwd | |
| ls | |
| pip install --editable iblrig | |
| pip install --editable iblpybpod | |
| cd iblrig | |
| python setup_pybpod.py --github_actions | |
| cd Bonsai | |
| powershell.exe .\install.ps1 | |
| - name: iblrig unit tests | |
| shell: pwsh -l {0} | |
| run: | | |
| cd iblrig\test_iblrig | |
| python -m unittest discover | |
| - name: Generate requirements_frozen.txt | |
| shell: pwsh -l {0} | |
| run: | | |
| pwd | |
| ls | |
| pip freeze > requirements_frozen.txt | |
| - name: Store frozen requirements as artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: requirements_frozen | |
| path: | | |
| requirements_frozen.txt | |
| iblrig/iblrig_params_ci.yml |