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Skip test subjects in job creator #885

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merged 2 commits into from
Nov 18, 2024
Merged

Skip test subjects in job creator #885

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83255f0
Skip test subjects in job creator; resolves https://github.com/int-br…
k1o0 Nov 14, 2024
b501001
Update readme
k1o0 Nov 18, 2024
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8 changes: 4 additions & 4 deletions README.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
# IBL Python Libraries
[![Coverage badge](https://img.shields.io/endpoint.svg?url=https%3A%2F%2Fibllib.hooks.internationalbrainlab.org%2Fcoverage%2Fibllib%2Fmaster)](https://ibllib.hooks.internationalbrainlab.org/coverage/master)
# IBL Python Libraries
[![Coverage badge](https://img.shields.io/endpoint.svg?url=https%3A%2F%2Fibllib.hooks.internationalbrainlab.org%2Fcoverage%2Fibllib%2Fmaster)](https://ibllib.hooks.internationalbrainlab.org/coverage/master)
[![Tests status badge](https://img.shields.io/endpoint.svg?url=https%3A%2F%2Fibllib.hooks.internationalbrainlab.org%2Ftests%2Fibllib%2Fmaster)](https://ibllib.hooks.internationalbrainlab.org/logs/records/master)
[![Tests status badge](https://img.shields.io/endpoint?label=develop&url=https%3A%2F%2Fibllib.hooks.internationalbrainlab.org%2Ftests%2Fibllib%2Fdevelop)](https://ibllib.hooks.internationalbrainlab.org/logs/records/develop)

Expand All @@ -14,7 +14,7 @@ The library is currently 2 main modules:
## Requirements
**OS**: Only tested on Linux. Windows and Mac may work, but are not supported.

**Python Module**: Python 3.8 or higher
**Python Module**: Python 3.10 or higher

## Installation, documentation and examples
https://docs.internationalbrainlab.org
Expand All @@ -23,7 +23,7 @@ https://docs.internationalbrainlab.org
## Contribution and development practices
See https://int-brain-lab.github.io/iblenv/07_contribution.html

We use gitflow and Semantic Versioning.
We use Semantic Versioning.

Before committing to your branch:
- run tests
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8 changes: 7 additions & 1 deletion ibllib/pipes/local_server.py
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Expand Up @@ -17,6 +17,8 @@
from one.api import ONE
from one.webclient import AlyxClient
from one.remote.globus import get_lab_from_endpoint_id, get_local_endpoint_id
from one.alf.spec import is_session_path
from one.alf.path import session_path_parts

from ibllib import __version__ as ibllib_version
from ibllib.pipes import tasks
Expand Down Expand Up @@ -104,11 +106,15 @@ def job_creator(root_path, one=None, dry=False, rerun=False):
if not one:
one = ONE(cache_rest=None)
rc = IBLRegistrationClient(one=one)
flag_files = list(Path(root_path).glob('**/raw_session.flag'))
flag_files = Path(root_path).glob('*/????-??-??/*/raw_session.flag')
flag_files = filter(lambda x: is_session_path(x.parent), flag_files)
pipes = []
all_datasets = []
for flag_file in flag_files:
session_path = flag_file.parent
if session_path_parts(session_path)[1] in ('test', 'test_subject'):
_logger.debug('skipping test session %s', session_path)
continue
_logger.info(f'creating session for {session_path}')
if dry:
continue
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