revert changes to panel-tabset

insightsengineering · May 14, 2024 · 53393af · 53393af
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diff --git a/book/graphs/efficacy/fstg01.qmd b/book/graphs/efficacy/fstg01.qmd
@@ -7,7 +7,7 @@ subtitle: Subgroup Analysis of Best Overall Response
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -306,4 +306,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/efficacy/fstg02.qmd b/book/graphs/efficacy/fstg02.qmd
@@ -1,13 +1,15 @@
 ---
 title: FSTG02
 subtitle: Subgroup Analysis of Survival Duration
+editor_options: 
+  chunk_output_type: console
 ---
 
 ------------------------------------------------------------------------
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -278,4 +280,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/efficacy/kmg01.qmd b/book/graphs/efficacy/kmg01.qmd
@@ -7,7 +7,7 @@ subtitle: Kaplan-Meier Plot
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -239,4 +239,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/efficacy/mmrmg01.qmd b/book/graphs/efficacy/mmrmg01.qmd
@@ -10,7 +10,7 @@ subtitle: Plots for Mixed-Effect Model Repeated Measures Analysis
 Given an MMRM fitted with `s_mmrm`, `g_mmrm_lsmeans` displays for each visit the adjusted means within group and/or difference in adjusted means between groups.
 `g_mmrm_diagnostic` displays marginal residual plots for evaluating model fit.
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup and <br/> Model Fitting
 
 ```{r setup, message = FALSE}
@@ -180,4 +180,4 @@ shinyApp(app$ui, app$server)
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/efficacy/mmrmg02.qmd b/book/graphs/efficacy/mmrmg02.qmd
@@ -7,7 +7,7 @@ subtitle: Forest Plot for Mixed-Effect Model Repeated Measures
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -137,4 +137,4 @@ height <- 4
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/other/brg01.qmd b/book/graphs/other/brg01.qmd
@@ -7,7 +7,7 @@ subtitle: Bar Chart
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -374,4 +374,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/other/bwg01.qmd b/book/graphs/other/bwg01.qmd
@@ -7,7 +7,7 @@ subtitle: Box Plot
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -520,4 +520,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/other/cig01.qmd b/book/graphs/other/cig01.qmd
@@ -7,7 +7,7 @@ subtitle: Confidence Interval Plot
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -287,4 +287,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/other/ippg01.qmd b/book/graphs/other/ippg01.qmd
@@ -9,7 +9,7 @@ subtitle: Individual Patient Plot Over Time
 
 For illustration purposes, we will subset the `adlb` dataset for safety population in treatment arm A and a specific lab parameter (`ALT`).
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -180,4 +180,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/other/ltg01.qmd b/book/graphs/other/ltg01.qmd
@@ -9,7 +9,7 @@ subtitle: Lattice Plot of Laboratory Tests by Treatment Group Over Time
 
 Lattice plots are natively handled by R, the examples below rely mostly on the package `ggplot2`.
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -276,4 +276,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/other/mng01.qmd b/book/graphs/other/mng01.qmd
@@ -7,7 +7,7 @@ subtitle: Mean Plot
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -254,4 +254,4 @@ shinyApp(app$ui, app$server)
 :::
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkcg01.qmd b/book/graphs/pharmacokinetic/pkcg01.qmd
@@ -7,7 +7,7 @@ subtitle: Plot of PK Concentration Over Time by Subject
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -113,4 +113,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkcg02.qmd b/book/graphs/pharmacokinetic/pkcg02.qmd
@@ -7,7 +7,7 @@ subtitle: Plot of PK Concentration Over Time by Cohort/Treatment Group/Dose
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -114,4 +114,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkcg03.qmd b/book/graphs/pharmacokinetic/pkcg03.qmd
@@ -7,7 +7,7 @@ subtitle: Plot of Mean PK Concentration Over Time by Cohort
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -126,4 +126,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkpg01.qmd b/book/graphs/pharmacokinetic/pkpg01.qmd
@@ -7,7 +7,7 @@ subtitle: Plot of Mean Cumulative Percentage (%) of Recovered Drug in Urine
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -161,4 +161,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkpg02.qmd b/book/graphs/pharmacokinetic/pkpg02.qmd
@@ -7,7 +7,7 @@ subtitle: Pharmacokinetic Parameter Summary of Serum PK Parameters by Treatment
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -177,4 +177,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkpg03.qmd b/book/graphs/pharmacokinetic/pkpg03.qmd
@@ -7,7 +7,7 @@ subtitle: Box Plot of Pharmacokinetic Parameters by Visit -- Plasma
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -70,4 +70,4 @@ plot
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkpg04.qmd b/book/graphs/pharmacokinetic/pkpg04.qmd
@@ -7,7 +7,7 @@ subtitle: Box Plot of Pharmacokinetic Parameters by Visit -- Plasma
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -72,4 +72,4 @@ plot
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/graphs/pharmacokinetic/pkpg06.qmd b/book/graphs/pharmacokinetic/pkpg06.qmd
@@ -7,7 +7,7 @@ subtitle: Boxplot of Metabolite to Parent Ratios by Treatment
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -277,4 +277,4 @@ plot
 ```
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/ADA/adal02.qmd b/book/listings/ADA/adal02.qmd
@@ -7,7 +7,7 @@ subtitle: Listing of Anti-Drug Antibody Data for Treatment Emergent ADA Positive
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -135,4 +135,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/ECG/egl01.qmd b/book/listings/ECG/egl01.qmd
@@ -7,7 +7,7 @@ subtitle: 'Listing of ECG Data: Safety-Evaluable Patients'
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -102,4 +102,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/adverse-events/ael01.qmd b/book/listings/adverse-events/ael01.qmd
@@ -7,7 +7,7 @@ subtitle: Listing of Preferred Terms, Lowest Level Terms, and Investigator-Speci
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -52,4 +52,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/adverse-events/ael01_nollt.qmd b/book/listings/adverse-events/ael01_nollt.qmd
@@ -7,7 +7,7 @@ subtitle: Listing of Preferred Terms and Investigator-Specified Adverse Event Te
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -51,4 +51,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/adverse-events/ael02.qmd b/book/listings/adverse-events/ael02.qmd
@@ -7,7 +7,7 @@ subtitle: Listing of Adverse Events
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -94,4 +94,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/adverse-events/ael02_ed.qmd b/book/listings/adverse-events/ael02_ed.qmd
@@ -7,7 +7,7 @@ subtitle: Listing of Adverse Events (for Early Development Studies)
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -112,4 +112,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::
diff --git a/book/listings/adverse-events/ael03.qmd b/book/listings/adverse-events/ael03.qmd
@@ -7,7 +7,7 @@ subtitle: Listing of Serious Adverse Events
 
 {{< include ../../_utils/envir_hook.qmd >}}
 
-::: panel-tabset
+:::: {.panel-tabset}
 ## Data Setup
 
 ```{r setup, message = FALSE}
@@ -108,4 +108,4 @@ head(lsting, 20)
 {{< include ../../_utils/save_results.qmd >}}
 
 {{< include ../../repro.qmd >}}
-:::
+::::