57 reorganize tlg@main (#117)

closes #57 --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Joe Zhu <[email protected]>
insightsengineering · Sep 19, 2023 · 3ad5c27 · 3ad5c27
1 parent 160ac90
commit 3ad5c27
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Showing 64 changed files with 22 additions and 2 deletions.
diff --git a/book/generate-index.R b/book/generate-index.R
@@ -37,21 +37,41 @@ cat(
 # Tables
 
 section_header("Tables")
+create_subsection("./tables/ada", "ADA")
 create_subsection("./tables/adverse-events", "Adverse Events")
+create_subsection("./tables/con-med", "Concomitant Medications")
+create_subsection("./tables/deaths", "Deaths")
+create_subsection("./tables/demography", "Demography")
+create_subsection("./tables/disclosures", "Disclosures")
+create_subsection("./tables/disposition", "Disposition")
+create_subsection("./tables/ecg", "ECG")
 create_subsection("./tables/efficacy", "Efficacy")
+create_subsection("./tables/exposure", "Exposure")
 create_subsection("./tables/lab-results", "Lab Results")
+create_subsection("./tables/medical-history", "Medical History")
 create_subsection("./tables/pharmacokinetic", "Pharmacokinetic")
+create_subsection("./tables/rmp", "Risk Management Plan")
 create_subsection("./tables/safety", "Safety")
-create_subsection("./tables/other", "Other")
+create_subsection("./tables/vital-signs", "Vital Signs")
 
 # Listings
 
 section_header("Listings")
+create_subsection("./listings/ada", "ADA")
+create_subsection("./listings/adverse-events", "Adverse Events")
+create_subsection("./listings/con-med", "Concomitant Medications")
+create_subsection("./listings/disposition", "Disposition")
+create_subsection("./listings/dsur", "Development Safety Update Report")
+create_subsection("./listings/ecg", "ECG")
+create_subsection("./listings/exposure", "Exposure")
+create_subsection("./listings/lab-results", "Lab Results")
+create_subsection("./listings/medical-history", "Medical History")
 create_subsection("./listings/pharmacokinetic", "Pharmacokinetic")
-create_subsection("./listings/other", "Other")
+create_subsection("./listings/vital-signs", "Vital Signs")
 
 # Graphs
 
 section_header("Graphs")
+create_subsection("./graphs/efficacy", "Efficacy")
 create_subsection("./graphs/pharmacokinetic", "Pharmacokinetic")
 create_subsection("./graphs/other", "Other")
diff --git a/book/graphs/other/fstg01.qmd → book/graphs/efficacy/fstg01.qmd b/book/graphs/other/fstg01.qmd → book/graphs/efficacy/fstg01.qmd
diff --git a/book/graphs/other/fstg02.qmd → book/graphs/efficacy/fstg02.qmd b/book/graphs/other/fstg02.qmd → book/graphs/efficacy/fstg02.qmd
diff --git a/book/graphs/other/mmrmg01.qmd → book/graphs/efficacy/mmrmg01.qmd b/book/graphs/other/mmrmg01.qmd → book/graphs/efficacy/mmrmg01.qmd
diff --git a/book/graphs/other/mmrmg02.qmd → book/graphs/efficacy/mmrmg02.qmd b/book/graphs/other/mmrmg02.qmd → book/graphs/efficacy/mmrmg02.qmd
diff --git a/book/listings/pharmacokinetic/adal02.qmd → book/listings/ada/adal02.qmd b/book/listings/pharmacokinetic/adal02.qmd → book/listings/ada/adal02.qmd
diff --git a/book/listings/other/ael01.qmd → book/listings/adverse-events/ael01.qmd b/book/listings/other/ael01.qmd → book/listings/adverse-events/ael01.qmd
diff --git a/book/listings/other/ael01_nollt.qmd → book/listings/adverse-events/ael01_nollt.qmd b/book/listings/other/ael01_nollt.qmd → book/listings/adverse-events/ael01_nollt.qmd
diff --git a/book/listings/other/ael02.qmd → book/listings/adverse-events/ael02.qmd b/book/listings/other/ael02.qmd → book/listings/adverse-events/ael02.qmd
diff --git a/book/listings/other/ael02_ed.qmd → book/listings/adverse-events/ael02_ed.qmd b/book/listings/other/ael02_ed.qmd → book/listings/adverse-events/ael02_ed.qmd
diff --git a/book/listings/other/ael03.qmd → book/listings/adverse-events/ael03.qmd b/book/listings/other/ael03.qmd → book/listings/adverse-events/ael03.qmd
diff --git a/book/listings/other/ael04.qmd → book/listings/adverse-events/ael04.qmd b/book/listings/other/ael04.qmd → book/listings/adverse-events/ael04.qmd
diff --git a/book/listings/other/cml01.qmd → book/listings/con-med/cml01.qmd b/book/listings/other/cml01.qmd → book/listings/con-med/cml01.qmd
diff --git a/book/listings/other/cml02a_gl.qmd → book/listings/con-med/cml02a_gl.qmd b/book/listings/other/cml02a_gl.qmd → book/listings/con-med/cml02a_gl.qmd
diff --git a/book/listings/other/cml02b_gl.qmd → book/listings/con-med/cml02b_gl.qmd b/book/listings/other/cml02b_gl.qmd → book/listings/con-med/cml02b_gl.qmd
diff --git a/book/listings/other/dsl01.qmd → book/listings/disposition/dsl01.qmd b/book/listings/other/dsl01.qmd → book/listings/disposition/dsl01.qmd
diff --git a/book/listings/other/dsl02.qmd → book/listings/disposition/dsl02.qmd b/book/listings/other/dsl02.qmd → book/listings/disposition/dsl02.qmd
diff --git a/book/listings/other/dsur4.qmd → book/listings/dsur/dsur4.qmd b/book/listings/other/dsur4.qmd → book/listings/dsur/dsur4.qmd
diff --git a/book/listings/other/egl01.qmd → book/listings/ecg/egl01.qmd b/book/listings/other/egl01.qmd → book/listings/ecg/egl01.qmd
diff --git a/book/listings/other/oncl01.qmd → book/listings/efficacy/oncl01.qmd b/book/listings/other/oncl01.qmd → book/listings/efficacy/oncl01.qmd
diff --git a/book/listings/other/exl01.qmd → book/listings/exposure/exl01.qmd b/book/listings/other/exl01.qmd → book/listings/exposure/exl01.qmd
diff --git a/book/listings/other/lbl01.qmd → book/listings/lab-results/lbl01.qmd b/book/listings/other/lbl01.qmd → book/listings/lab-results/lbl01.qmd
diff --git a/book/listings/other/lbl01_rls.qmd → book/listings/lab-results/lbl01_rls.qmd b/book/listings/other/lbl01_rls.qmd → book/listings/lab-results/lbl01_rls.qmd
diff --git a/book/listings/other/lbl02a.qmd → book/listings/lab-results/lbl02a.qmd b/book/listings/other/lbl02a.qmd → book/listings/lab-results/lbl02a.qmd
diff --git a/book/listings/other/lbl02a_rls.qmd → book/listings/lab-results/lbl02a_rls.qmd b/book/listings/other/lbl02a_rls.qmd → book/listings/lab-results/lbl02a_rls.qmd
diff --git a/book/listings/other/lbl02b.qmd → book/listings/lab-results/lbl02b.qmd b/book/listings/other/lbl02b.qmd → book/listings/lab-results/lbl02b.qmd
diff --git a/book/listings/other/mhl01.qmd → book/listings/medical-history/mhl01.qmd b/book/listings/other/mhl01.qmd → book/listings/medical-history/mhl01.qmd
diff --git a/book/listings/other/vsl01.qmd → book/listings/vital-signs/vsl01.qmd b/book/listings/other/vsl01.qmd → book/listings/vital-signs/vsl01.qmd
diff --git a/book/tables/pharmacokinetic/adat01.qmd → book/tables/ada/adat01.qmd b/book/tables/pharmacokinetic/adat01.qmd → book/tables/ada/adat01.qmd
diff --git a/book/tables/pharmacokinetic/adat02.qmd → book/tables/ada/adat02.qmd b/book/tables/pharmacokinetic/adat02.qmd → book/tables/ada/adat02.qmd
diff --git a/book/tables/pharmacokinetic/adat03.qmd → book/tables/ada/adat03.qmd b/book/tables/pharmacokinetic/adat03.qmd → book/tables/ada/adat03.qmd
diff --git a/book/tables/pharmacokinetic/adat04a.qmd → book/tables/ada/adat04a.qmd b/book/tables/pharmacokinetic/adat04a.qmd → book/tables/ada/adat04a.qmd
diff --git a/book/tables/pharmacokinetic/adat04b.qmd → book/tables/ada/adat04b.qmd b/book/tables/pharmacokinetic/adat04b.qmd → book/tables/ada/adat04b.qmd
diff --git a/book/tables/safety/cmt01.qmd → book/tables/con-med/cmt01.qmd b/book/tables/safety/cmt01.qmd → book/tables/con-med/cmt01.qmd
diff --git a/book/tables/safety/cmt01a.qmd → book/tables/con-med/cmt01a.qmd b/book/tables/safety/cmt01a.qmd → book/tables/con-med/cmt01a.qmd
diff --git a/book/tables/safety/cmt01b.qmd → book/tables/con-med/cmt01b.qmd b/book/tables/safety/cmt01b.qmd → book/tables/con-med/cmt01b.qmd
diff --git a/book/tables/safety/cmt02_pt.qmd → book/tables/con-med/cmt02_pt.qmd b/book/tables/safety/cmt02_pt.qmd → book/tables/con-med/cmt02_pt.qmd
diff --git a/book/tables/safety/dtht01.qmd → book/tables/deaths/dtht01.qmd b/book/tables/safety/dtht01.qmd → book/tables/deaths/dtht01.qmd
diff --git a/book/tables/safety/dmt01.qmd → book/tables/demography/dmt01.qmd b/book/tables/safety/dmt01.qmd → book/tables/demography/dmt01.qmd
diff --git a/book/tables/other/disclosurest01.qmd → book/tables/disclosures/disclosurest01.qmd b/book/tables/other/disclosurest01.qmd → book/tables/disclosures/disclosurest01.qmd
diff --git a/book/tables/safety/eudrat01.qmd → book/tables/disclosures/eudrat01.qmd b/book/tables/safety/eudrat01.qmd → book/tables/disclosures/eudrat01.qmd
diff --git a/book/tables/safety/eudrat02.qmd → book/tables/disclosures/eudrat02.qmd b/book/tables/safety/eudrat02.qmd → book/tables/disclosures/eudrat02.qmd
diff --git a/book/tables/safety/dst01.qmd → book/tables/disposition/dst01.qmd b/book/tables/safety/dst01.qmd → book/tables/disposition/dst01.qmd
diff --git a/book/tables/safety/pdt01.qmd → book/tables/disposition/pdt01.qmd b/book/tables/safety/pdt01.qmd → book/tables/disposition/pdt01.qmd
diff --git a/book/tables/safety/pdt02.qmd → book/tables/disposition/pdt02.qmd b/book/tables/safety/pdt02.qmd → book/tables/disposition/pdt02.qmd
diff --git a/book/tables/safety/egt01.qmd → book/tables/ecg/egt01.qmd b/book/tables/safety/egt01.qmd → book/tables/ecg/egt01.qmd
diff --git a/book/tables/safety/egt02.qmd → book/tables/ecg/egt02.qmd b/book/tables/safety/egt02.qmd → book/tables/ecg/egt02.qmd
diff --git a/book/tables/safety/egt03.qmd → book/tables/ecg/egt03.qmd b/book/tables/safety/egt03.qmd → book/tables/ecg/egt03.qmd
diff --git a/book/tables/safety/egt04.qmd → book/tables/ecg/egt04.qmd b/book/tables/safety/egt04.qmd → book/tables/ecg/egt04.qmd
diff --git a/book/tables/safety/egt05_qtcat.qmd → book/tables/ecg/egt05_qtcat.qmd b/book/tables/safety/egt05_qtcat.qmd → book/tables/ecg/egt05_qtcat.qmd
diff --git a/book/tables/other/aovt02.qmd → book/tables/efficacy/aovt02.qmd b/book/tables/other/aovt02.qmd → book/tables/efficacy/aovt02.qmd
diff --git a/book/tables/other/aovt03.qmd → book/tables/efficacy/aovt03.qmd b/book/tables/other/aovt03.qmd → book/tables/efficacy/aovt03.qmd
diff --git a/book/tables/other/cmht01.qmd → book/tables/efficacy/cmht01.qmd b/book/tables/other/cmht01.qmd → book/tables/efficacy/cmht01.qmd
diff --git a/book/tables/other/ratet01.qmd → book/tables/efficacy/ratet01.qmd b/book/tables/other/ratet01.qmd → book/tables/efficacy/ratet01.qmd
diff --git a/book/tables/other/rbmit01.qmd → book/tables/efficacy/rbmit01.qmd b/book/tables/other/rbmit01.qmd → book/tables/efficacy/rbmit01.qmd
diff --git a/book/tables/safety/ext01.qmd → book/tables/exposure/ext01.qmd b/book/tables/safety/ext01.qmd → book/tables/exposure/ext01.qmd
diff --git a/book/tables/safety/mht01.qmd → book/tables/medical-history/mht01.qmd b/book/tables/safety/mht01.qmd → book/tables/medical-history/mht01.qmd
diff --git a/book/tables/other/rmpt01.qmd → book/tables/rmp/rmpt01.qmd b/book/tables/other/rmpt01.qmd → book/tables/rmp/rmpt01.qmd
diff --git a/book/tables/other/rmpt03.qmd → book/tables/rmp/rmpt03.qmd b/book/tables/other/rmpt03.qmd → book/tables/rmp/rmpt03.qmd
diff --git a/book/tables/other/rmpt04.qmd → book/tables/rmp/rmpt04.qmd b/book/tables/other/rmpt04.qmd → book/tables/rmp/rmpt04.qmd
diff --git a/book/tables/other/rmpt05.qmd → book/tables/rmp/rmpt05.qmd b/book/tables/other/rmpt05.qmd → book/tables/rmp/rmpt05.qmd
diff --git a/book/tables/other/rmpt06.qmd → book/tables/rmp/rmpt06.qmd b/book/tables/other/rmpt06.qmd → book/tables/rmp/rmpt06.qmd
diff --git a/book/tables/safety/vst01.qmd → book/tables/vital-signs/vst01.qmd b/book/tables/safety/vst01.qmd → book/tables/vital-signs/vst01.qmd
diff --git a/book/tables/safety/vst02.qmd → book/tables/vital-signs/vst02.qmd b/book/tables/safety/vst02.qmd → book/tables/vital-signs/vst02.qmd