Merge branch 'main' into shajoezhu-patch-1

.github/workflows/check.yaml

@@ -68,6 +68,9 @@ jobs:
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      additional-env-vars: |
+        NOT_CRAN=true
   linter:
     if: github.event_name != 'push'
     name: SuperLinter 🦸‍♀️

.github/workflows/release.yaml

@@ -52,6 +52,9 @@ jobs:
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      additional-env-vars: |
+        NOT_CRAN=true
   wasm:
     name: Build WASM packages 🧑‍🏭
     needs: release

.github/workflows/scheduled.yaml

@@ -5,9 +5,26 @@ on:
   schedule:
     - cron: '45 3 * * 0'
   workflow_dispatch:
+    inputs:
+      chosen-workflow:
+        description: |
+          Select which workflow you'd like to run
+        required: true
+        type: choice
+        default: rhub
+        options:
+          - rhub
+          - dependency-test
+          - branch-cleanup
+          - revdepcheck
 
 jobs:
   dependency-test:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'dependency-test'
+      )
     strategy:
       fail-fast: false
       matrix:
@@ -24,6 +41,11 @@ jobs:
       extra-deps: |
         lme4 (>= 1.1-35)
   branch-cleanup:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'branch-cleanup'
+      )
     name: Branch Cleanup 🧹
     uses: insightsengineering/r.pkg.template/.github/workflows/branch-cleanup.yaml@main
     secrets:
@@ -34,9 +56,19 @@ jobs:
     with:
       issue-assignees: "shajoezhu,Melkiades,edelarua,gmbecker,ayogasekaram"
   revdepcheck:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'revdepcheck'
+      )
     name: revdepcheck ↩️
     uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main
   rhub:
+    if: >
+      github.event_name == 'schedule' || (
+        github.event_name == 'workflow_dispatch' &&
+        inputs.chosen-workflow == 'rhub'
+      )
     name: R-hub 🌐
     uses: insightsengineering/r.pkg.template/.github/workflows/rhub.yaml@main
     with:

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ default_language_version:
   python: python3
 repos:
   - repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.4.3
+    rev: v0.4.3.9001
     hooks:
       - id: style-files
         name: Style code with `styler`

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: tern
 Title: Create Common TLGs Used in Clinical Trials
-Version: 0.9.5.9022
-Date: 2024-09-09
+Version: 0.9.5.9023
+Date: 2024-09-16
 Authors@R: c(
     person("Joe", "Zhu", , "[email protected]", role = c("aut", "cre")),
     person("Daniel", "Sabanés Bové", , "[email protected]", role = "aut"),

NEWS.md

@@ -1,4 +1,4 @@
-# tern 0.9.5.9022
+# tern 0.9.5.9023
 ### Enhancements
 * Added `errorbar_width` and `linetype` parameters to `g_lineplot`.
 * Reworking of `summarize_glm_count()` documentation and all its associated functions to better describe the results and the functions' purpose.