removing backtics from functions.

R/dummy_functions.R

@@ -3,7 +3,7 @@
 #' `r lifecycle::badge("experimental")`
 #'
 #' @inheritParams module
-#' @return A `teal` module which can be included in the `modules` argument to [`teal::init()`].
+#' @return A `teal` module which can be included in the `modules` argument to [init()].
 #' @examples
 #' app <- init(
 #'   data = teal_data(IRIS = iris, MTCARS = mtcars),

R/init.R

@@ -16,20 +16,19 @@
 #' defaults from the `teal_data` environment will be used.
 #'
 #' @param data (`teal_data` or `teal_data_module`)
-#' `teal_data` object as returned by [`teal.data::teal_data()`] or `teal_data_module`.
 #' @param modules (`list` or `teal_modules` or `teal_module`)
 #'   nested list of `teal_modules` or `teal_module` objects or a single
 #'   `teal_modules` or `teal_module` object. These are the specific output modules which
-#'   will be displayed in the `teal` application. See [`modules()`] and [`module()`] for
+#'   will be displayed in the `teal` application. See [modules()] and [module()] for
 #'   more details.
 #' @param title (`shiny.tag` or `character(1)`)
 #'   The browser window title. Defaults to a title "teal app" with the icon of NEST.
 #'   Can be created using the `build_app_title()` or
 #'   by passing a valid `shiny.tag` which is a head tag with title and link tag.
 #' @param filter (`teal_slices`)
-#'   Specification of initial filter. Filters can be specified using [`teal::teal_slices()`].
+#'   Specification of initial filter. Filters can be specified using [teal::teal_slices()].
 #'   Old way of specifying filters through a list is deprecated and will be removed in the
-#'   next release. Please fix your applications to use [`teal::teal_slices()`].
+#'   next release. Please fix your applications to use [teal::teal_slices()].
 #' @param header (`shiny.tag` or `character(1)`)
 #'   The header of the app.
 #' @param footer (`shiny.tag` or `character(1)`)

R/module_snapshot_manager.R

@@ -40,7 +40,7 @@
 #' The snapshot contains the `mapping` attribute of the initial application state
 #' (or one that has been restored), which may not reflect the current one,
 #' so `mapping_matrix` is transformed to obtain the current mapping, i.e. a list that,
-#' when passed to the `mapping` argument of [`teal::teal_slices`], would result in the current mapping.
+#' when passed to the `mapping` argument of [teal_slices()], would result in the current mapping.
 #' This is substituted as the snapshot's `mapping` attribute and the snapshot is added to the snapshot list.
 #'
 #' To restore app state, a snapshot is retrieved from storage and rebuilt into a `teal_slices` object.
@@ -49,7 +49,7 @@
 #' The snapshot is then set as the current content of `slices_global`.
 #'
 #' To save a snapshot, the snapshot is retrieved and reassembled just like for restoring,
-#' and then saved to file with [`slices_store`].
+#' and then saved to file with [slices_store()].
 #'
 #' When a snapshot is uploaded, it will first be added to storage just like a newly created one,
 #' and then used to restore app state much like a snapshot taken from storage.

R/modules.R

@@ -173,10 +173,10 @@ is_arg_used <- function(modules, arg) {
 #' This function embeds a `shiny` module inside a `teal` application. One `teal_module` maps to one `shiny` module.
 #'
 #' @param label (`character(1)`) Label shown in the navigation item for the module. Any label possible except
-#'  `"global_filters"` - read more in `mapping` argument of [`teal::teal_slices`].
+#'  `"global_filters"` - read more in `mapping` argument of [teal_slices()].
 #' @param server (`function`) `shiny` module with following arguments:
-#'  - `id` - `teal` will set proper `shiny` namespace for this module (see [`shiny::moduleServer()`]).
-#'  - `input`, `output`, `session` - (not recommended) then [`shiny::callModule()`] will be used to call a module.
+#'  - `id` - `teal` will set proper `shiny` namespace for this module (see [shiny::moduleServer()]).
+#'  - `input`, `output`, `session` - (not recommended) then [shiny::callModule()] will be used to call a module.
 #'  - `data` (optional) module will receive a `teal_data` object, a list of reactive (filtered) data specified in
 #'     the `filters` argument.
 #'  - `datasets` (optional) module will receive `FilteredData`. (See [`teal.slice::FilteredData`]).

R/modules_debugging.R

@@ -5,7 +5,7 @@
 #' Dummy module to show the filter calls generated by the right encoding panel
 #'
 #' Please do not remove, this is useful for debugging `teal` without
-#' dependencies and simplifies [`devtools::load_all`] which otherwise fails
+#' dependencies and simplifies [devtools::load_all()] which otherwise fails
 #' and avoids session restarts!
 #'
 #' @param label `character` label of module

R/reporter_previewer_module.R

@@ -2,17 +2,17 @@
 #'
 #' @description `r lifecycle::badge("experimental")`
 #'
-#' This function wraps [`teal.reporter::reporter_previewer_ui()`] and
-#' [`teal.reporter::reporter_previewer_srv()`] into a `teal_module` to be
+#' This function wraps [teal.reporter::reporter_previewer_ui()] and
+#' [teal.reporter::reporter_previewer_srv()] into a `teal_module` to be
 #' used in `teal` applications.
 #'
-#' If you are creating a `teal` application using [`teal::init()`] then this
+#' If you are creating a `teal` application using [init()] then this
 #' module will be added to your application automatically if any of your `teal modules`
 #' support report generation.
 #'
 #' @inheritParams module
 #' @param server_args (named `list`)
-#'  Arguments passed to [`teal.reporter::reporter_previewer_srv()`].
+#'  Arguments passed to [teal.reporter::reporter_previewer_srv()].
 #' @return `teal_module` (extended with `teal_module_previewer` class) containing the `teal.reporter` previewer
 #' functionality.
 #' @export

R/teal.R

@@ -4,7 +4,7 @@
 #' interactive data analysis environment.
 #'
 #' To learn mode about the package either read the project website at
-#' [project website](https://insightsengineering.github.io/teal/latest-tag/) or read the [`init`] manual pages.
+#' [project website](https://insightsengineering.github.io/teal/latest-tag/) or read the [init()] manual pages.
 #'
 #' @keywords internal
 "_PACKAGE"

R/teal_data_module.R

@@ -51,7 +51,7 @@
 #'
 #' @name teal_data_module
 #'
-#' @seealso [`teal_data-class`], [`teal.code::qenv()`]
+#' @seealso [teal.data::`teal_data-class`], [teal.code::qenv()]
 #'
 #' @export
 teal_data_module <- function(ui, server) {

R/teal_reporter.R

@@ -36,7 +36,7 @@ TealReportCard <- R6::R6Class( # nolint: object_name_linter.
     #'  the default `yaml::as.yaml` to format the list.
     #'  If the filter state list is empty, nothing is appended to the `content`.
     #'
-    #' @param fs (`teal_slices`) object returned from [`teal_slices()`] function.
+    #' @param fs (`teal_slices`) object returned from [teal_slices()] function.
     #' @return invisibly self
     append_fs = function(fs) {
       checkmate::assert_class(fs, "teal_slices")
@@ -81,7 +81,7 @@ TealSlicesBlock <- R6::R6Class( # nolint: object_name_linter.
     #'
     #' @details Returns a `TealSlicesBlock` object with no content and no parameters.
     #'
-    #' @param content (`teal_slices`) object returned from [`teal_slices()`] function.
+    #' @param content (`teal_slices`) object returned from [teal_slices()] function.
     #' @param style (`character(1)`) string specifying style to apply.
     #'
     #' @return `TealSlicesBlock`
@@ -99,7 +99,7 @@ TealSlicesBlock <- R6::R6Class( # nolint: object_name_linter.
     #' When `selected` field in `teal_slice` object is a range, then it is displayed as a "min"
     #'
     #'
-    #' @param content (`teal_slices`) object returned from [`teal_slices()`] function.
+    #' @param content (`teal_slices`) object returned from [teal_slices()] function.
     #' @return invisibly self
     set_content = function(content) {
       checkmate::assert_class(content, "teal_slices")

R/teal_slices.R

@@ -19,7 +19,7 @@
 #' [`teal`'s GitHub repository](https://github.com/insightsengineering/teal/)._
 #'
 #'  (named `list`) specifies which filters will be active in which modules on app start.
-#'  Elements should contain character vector of `teal_slice` `id`s (see [`teal.slice::teal_slice()`]).
+#'  Elements should contain character vector of `teal_slice` `id`s (see [`teal.slice::teal_slice`]).
 #'  Names of the list should correspond to `teal_module` `label` set in [module()] function.
 #'  - `id`s listed under `"global_filters` will be active in all modules.
 #'  - If missing, all filters will be applied to all modules.
@@ -35,7 +35,7 @@
 #' @return
 #' A `teal_slices` object.
 #'
-#' @seealso [`teal.slice::teal_slices`], [`teal.slice::teal_slice`], [`slices_store`]
+#' @seealso [`teal.slice::teal_slices`], [`teal.slice::teal_slice`], [slices_store()]
 #'
 #' @examples
 #' filter <- teal_slices(