Merge branch 'main' into fix_links@main

.pre-commit-config.yaml

@@ -19,7 +19,7 @@ repos:
           - davidgohel/gdtools # for flextable
           - mirai
           - checkmate
-          - crayon
+          - cli
           - jsonlite
           - lifecycle
           - logger

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: teal
 Title: Exploratory Web Apps for Analyzing Clinical Trials Data
-Version: 0.15.2.9094
+Version: 0.15.2.9095
 Date: 2024-12-19
 Authors@R: c(
     person("Dawid", "Kaledkowski", , "[email protected]", role = c("aut", "cre"),
@@ -41,7 +41,7 @@ Depends:
     teal.slice (>= 0.5.1.9015)
 Imports:
     checkmate (>= 2.1.0),
-    crayon,
+    cli,
     jsonlite,
     lifecycle (>= 0.2.0),
     logger (>= 0.2.0),
@@ -77,7 +77,7 @@ RdMacros:
     lifecycle
 Config/Needs/verdepcheck: rstudio/shiny, insightsengineering/teal.data,
     insightsengineering/teal.slice, mllg/checkmate, jeroen/jsonlite,
-    r-lib/lifecycle, daroczig/logger, shikokuchuo/mirai, r-lib/crayon,
+    r-lib/lifecycle, daroczig/logger, shikokuchuo/mirai, r-lib/cli,
     shikokuchuo/nanonext, rstudio/renv, r-lib/rlang, daattali/shinyjs,
     insightsengineering/teal.code, insightsengineering/teal.logger,
     insightsengineering/teal.reporter, insightsengineering/teal.widgets,

NEWS.md

@@ -1,4 +1,4 @@
-# teal 0.15.2.9094
+# teal 0.15.2.9095
 
 ### New features
 

R/module_teal_data.R

@@ -169,7 +169,7 @@ srv_validate_error <- function(id, data, validate_shiny_silent_error) {
             FALSE,
             paste(
               "Error when executing the `data` module:",
-              strip_style(paste(data()$message, collapse = "\n")),
+              cli::ansi_strip(paste(data()$message, collapse = "\n")),
               "\nCheck your inputs or contact app developer if error persists.",
               collapse = "\n"
             )

R/modules.R

@@ -339,9 +339,11 @@ modules <- function(..., label = "root") {
 #' )
 #' cat(format(mod))
 #' @export
-format.teal_module <- function(
-    x, is_last = FALSE, parent_prefix = "",
-    what = c("datasets", "properties", "ui_args", "server_args", "transformators"), ...) {
+format.teal_module <- function(x,
+                               is_last = FALSE,
+                               parent_prefix = "",
+                               what = c("datasets", "properties", "ui_args", "server_args", "transformators"),
+                               ...) {
   empty_text <- ""
   branch <- if (is_last) "L-" else "|-"
   current_prefix <- paste0(parent_prefix, branch, " ")
@@ -353,7 +355,7 @@ format.teal_module <- function(
     } else {
       colon_space <- paste(rep(" ", label_width), collapse = "")
 
-      first_item <- sprintf("%s (%s)", names(lst)[1], crayon::silver(class(lst[[1]])[1]))
+      first_item <- sprintf("%s (%s)", names(lst)[1], cli::col_silver(class(lst[[1]])[1]))
       rest_items <- if (length(lst) > 1) {
         paste(
           vapply(
@@ -363,7 +365,7 @@ format.teal_module <- function(
                 "%s%s (%s)",
                 paste0(content_prefix, "|  ", colon_space),
                 name,
-                crayon::silver(class(lst[[name]])[1])
+                cli::col_silver(class(lst[[name]])[1])
               )
             },
             character(1)
@@ -384,40 +386,40 @@ format.teal_module <- function(
     empty_text
   }
 
-  output <- pasten(current_prefix, crayon::bgWhite(x$label))
+  output <- pasten(current_prefix, cli::bg_white(cli::col_black(x$label)))
 
   if ("datasets" %in% what) {
     output <- paste0(
       output,
-      content_prefix, "|- ", crayon::yellow("Datasets         : "), paste(x$datanames, collapse = ", "), "\n"
+      content_prefix, "|- ", cli::col_yellow("Datasets         : "), paste(x$datanames, collapse = ", "), "\n"
     )
   }
   if ("properties" %in% what) {
     output <- paste0(
       output,
-      content_prefix, "|- ", crayon::blue("Properties:"), "\n",
-      content_prefix, "|  |- ", crayon::cyan("Bookmarkable  : "), bookmarkable, "\n",
-      content_prefix, "|  L- ", crayon::cyan("Reportable    : "), reportable, "\n"
+      content_prefix, "|- ", cli::col_blue("Properties:"), "\n",
+      content_prefix, "|  |- ", cli::col_cyan("Bookmarkable  : "), bookmarkable, "\n",
+      content_prefix, "|  L- ", cli::col_cyan("Reportable    : "), reportable, "\n"
     )
   }
   if ("ui_args" %in% what) {
     ui_args_formatted <- format_list(x$ui_args, label_width = 19)
     output <- paste0(
       output,
-      content_prefix, "|- ", crayon::green("UI Arguments     : "), ui_args_formatted, "\n"
+      content_prefix, "|- ", cli::col_green("UI Arguments     : "), ui_args_formatted, "\n"
     )
   }
   if ("server_args" %in% what) {
     server_args_formatted <- format_list(x$server_args, label_width = 19)
     output <- paste0(
       output,
-      content_prefix, "|- ", crayon::green("Server Arguments : "), server_args_formatted, "\n"
+      content_prefix, "|- ", cli::col_green("Server Arguments : "), server_args_formatted, "\n"
     )
   }
   if ("transformators" %in% what) {
     output <- paste0(
       output,
-      content_prefix, "L- ", crayon::magenta("Transformators       : "), transformators, "\n"
+      content_prefix, "L- ", cli::col_magenta("Transformators   : "), transformators, "\n"
     )
   }
 
@@ -526,12 +528,12 @@ format.teal_module <- function(
 #' @export
 format.teal_modules <- function(x, is_root = TRUE, is_last = FALSE, parent_prefix = "", ...) {
   if (is_root) {
-    header <- pasten(crayon::bold("TEAL ROOT"))
+    header <- pasten(cli::style_bold("TEAL ROOT"))
     new_parent_prefix <- "  " #' Initial indent for root level
   } else {
     if (!is.null(x$label)) {
       branch <- if (is_last) "L-" else "|-"
-      header <- pasten(parent_prefix, branch, " ", crayon::bold(x$label))
+      header <- pasten(parent_prefix, branch, " ", cli::style_bold(x$label))
       new_parent_prefix <- paste0(parent_prefix, if (is_last) "   " else "|  ")
     } else {
       header <- ""

R/utils.R

@@ -379,20 +379,6 @@ get_unique_labels <- function(labels) {
   make.unique(gsub("[^[:alnum:]]", "_", tolower(labels)), sep = "_")
 }
 
-#' Remove ANSI escape sequences from a string
-#' @noRd
-strip_style <- function(string) {
-  checkmate::assert_string(string)
-
-  gsub(
-    "(?:(?:\\x{001b}\\[)|\\x{009b})(?:(?:[0-9]{1,3})?(?:(?:;[0-9]{0,3})*)?[A-M|f-m])|\\x{001b}[A-M]",
-    "",
-    string,
-    perl = TRUE,
-    useBytes = TRUE
-  )
-}
-
 #' @keywords internal
 #' @noRd
 pasten <- function(...) paste0(..., "\n")

tests/testthat/test-modules.R

@@ -510,7 +510,7 @@ testthat::test_that("format.teal_modules returns proper structure", {
   appended_mods <- append_module(mods, mod3)
 
   testthat::expect_setequal(
-    strsplit(gsub("\033\\[[0-9;]*m", "", format(appended_mods)), "\n")[[1]],
+    strsplit(cli::ansi_strip(format(appended_mods)), "\n")[[1]],
     c(
       "TEAL ROOT",
       "  |- a",
@@ -520,23 +520,23 @@ testthat::test_that("format.teal_modules returns proper structure", {
       "  |  |  L- Reportable    : FALSE",
       "  |  |- UI Arguments     : ",
       "  |  |- Server Arguments : ",
-      "  |  L- Transformators       : ",
+      "  |  L- Transformators   : ",
       "  |- c",
       "  |  |- Datasets         : all",
       "  |  |- Properties:",
       "  |  |  |- Bookmarkable  : FALSE",
       "  |  |  L- Reportable    : FALSE",
       "  |  |- UI Arguments     : ",
       "  |  |- Server Arguments : ",
-      "  |  L- Transformators       : ",
+      "  |  L- Transformators   : ",
       "  L- c",
       "     |- Datasets         : all",
       "     |- Properties:",
       "     |  |- Bookmarkable  : FALSE",
       "     |  L- Reportable    : FALSE",
       "     |- UI Arguments     : ",
       "     |- Server Arguments : ",
-      "     L- Transformators       : "
+      "     L- Transformators   : "
     )
   )
 })