[actions skip] vbump (#512)

* vbump * logger * Update DESCRIPTION * changed eol to lf * Update _pkgdown.yml Co-authored-by: kpagacz <[email protected]>
insightsengineering · Jan 27, 2022 · 3816dd1 · 3816dd1
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Type: Package
 Package: teal
 Title: Exploratory Web Apps for Analyzing Clinical Trials Data
-Version: 0.10.0.9056.10
-Date: 2021-10-13
+Version: 0.10.1
+Date: 2022-01-27
 Authors@R: c(
     person("NEST", , , "[email protected]", role = c("aut", "cre")),
     person("Adrian", "Waddell", , "[email protected]", role = "aut"),
@@ -33,13 +33,13 @@ Imports:
     glue,
     grDevices,
     lifecycle,
-    logger,
+    logger (>= 0.2.0),
     magrittr,
     methods,
     MultiAssayExperiment,
     R6,
     rlang,
-    rtables (>= 0.3.8),
+    rtables (>= 0.4.0.2.1),
     shinyjs,
     shinyWidgets (>= 0.5.0),
     stats,
@@ -54,8 +54,8 @@ Suggests:
     readr,
     reticulate,
     rmarkdown,
-    scda,
-    scda.2021,
+    scda (>= 0.1.2),
+    scda.2021 (>= 0.1.2),
     testthat (>= 2.0),
     withr
 VignetteBuilder:

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# teal 0.10.0.9056.10
+# teal 0.10.1
 
 ### Breaking changes
 * Changed the `HTML` identifiers of `teal` modules - now each nested module receives its own `shiny` namespace.

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -1,3 +1,4 @@
+---
 url: https://insightsengineering.github.io/teal
 
 template:
@@ -11,170 +12,174 @@ navbar:
 
 reference:
   - title: Teal Core Functions
-    desc:  These are the main functions needed to build a teal app.
+    desc: These are the main functions needed to build a teal app.
     contents:
-    - bookmarkableShinyApp
-    - init
-    - module
-    - modules
-    - root_modules
-    - srv_teal_with_splash
-    - ui_teal_with_splash
+      - bookmarkableShinyApp
+      - init
+      - module
+      - modules
+      - root_modules
+      - srv_teal_with_splash
+      - ui_teal_with_splash
   - title: Teal Filtering and Selecting
-    desc: Functions used to filter observations and select variables from dataset.
+    desc: >-
+      Functions used to filter observations
+      and select variables from dataset.
     contents:
-    - add_no_selected_choices
-    - all_choices
-    - choices_labeled
-    - choices_selected
-    - data_extract_spec
-    - filter_spec
-    - get_variable_labels
-    - select_spec
-    - value_choices
-    - variable_choices
+      - add_no_selected_choices
+      - all_choices
+      - choices_labeled
+      - choices_selected
+      - data_extract_spec
+      - filter_spec
+      - get_variable_labels
+      - select_spec
+      - value_choices
+      - variable_choices
   - title: Teal filter-panel API
     desc: Functions used to modify filter-panel states.
     contents:
-    - get_filter_state
-    - set_filter_state
-    - remove_filter_state
-    - clear_filter_states
+      - get_filter_state
+      - set_filter_state
+      - remove_filter_state
+      - clear_filter_states
   - title: Teal modules UI
-    desc: Functions used to filter observations and select variables from dataset.
+    desc: >-
+      Functions used to filter observations
+      and select variables from dataset.
     contents:
-    - optionalSelectInput
-    - optionalSliderInput
-    - optionalSliderInputValMinMax
-    - updateOptionalSelectInput
+      - optionalSelectInput
+      - optionalSliderInput
+      - optionalSliderInputValMinMax
+      - updateOptionalSelectInput
   - title: Delayed Dataset Constructors
     desc: For creating delayed dataset objects.
     contents:
-    - cdisc_dataset
-    - cdisc_dataset_file
-    - dataset
-    - dataset_file
-    - mae_dataset
+      - cdisc_dataset
+      - cdisc_dataset_file
+      - dataset
+      - dataset_file
+      - mae_dataset
   - title: Delayed Dataset Connectors Constructors
     desc: For creating delayed dataset connector objects.
     contents:
-    - cdisc_data_connector
-    - cdisc_dataset_connector
-    - cdisc_dataset_connector_file
-    - code_cdisc_dataset_connector
-    - code_dataset_connector
-    - csv_cdisc_dataset_connector
-    - csv_dataset_connector
-    - data_connection
-    - dataset_connector
-    - dataset_connector_file
-    - fun_cdisc_dataset_connector
-    - fun_dataset_connector
-    - python_cdisc_dataset_connector
-    - python_dataset_connector
-    - rds_cdisc_dataset_connector
-    - rds_dataset_connector
-    - relational_data_connector
-    - scda_cdisc_dataset_connector
-    - scda_dataset_connector
-    - script_cdisc_dataset_connector
-    - script_dataset_connector
+      - cdisc_data_connector
+      - cdisc_dataset_connector
+      - cdisc_dataset_connector_file
+      - code_cdisc_dataset_connector
+      - code_dataset_connector
+      - csv_cdisc_dataset_connector
+      - csv_dataset_connector
+      - data_connection
+      - dataset_connector
+      - dataset_connector_file
+      - fun_cdisc_dataset_connector
+      - fun_dataset_connector
+      - python_cdisc_dataset_connector
+      - python_dataset_connector
+      - rds_cdisc_dataset_connector
+      - rds_dataset_connector
+      - relational_data_connector
+      - scda_cdisc_dataset_connector
+      - scda_dataset_connector
+      - script_cdisc_dataset_connector
+      - script_dataset_connector
   - title: Delayed Data Constructors
     desc: For creating delayed data objects.
     contents:
-    - cdisc_data
-    - cdisc_data_file
-    - cdse_data
-    - teal_data
-    - teal_data_file
+      - cdisc_data
+      - cdisc_data_file
+      - cdse_data
+      - teal_data
+      - teal_data_file
   - title: Delayed Dataset Functions
     desc: For loading and modifying delayed data objects.
     contents:
-    - as_cdisc
-    - callable_code
-    - callable_function
-    - get_attrs
-    - get_cdisc_keys
-    - get_code
-    - get_dataname
-    - get_dataset
-    - get_dataset_label
-    - get_datasets
-    - get_keys
-    - get_raw_data
-    - is_pulled
-    - load_dataset
-    - load_datasets
-    - mutate_data
-    - mutate_dataset
-    - mutate_join_keys
-    - resolve_delayed
-    - set_args
-    - set_keys
+      - as_cdisc
+      - callable_code
+      - callable_function
+      - get_attrs
+      - get_cdisc_keys
+      - get_code
+      - get_dataname
+      - get_dataset
+      - get_dataset_label
+      - get_datasets
+      - get_keys
+      - get_raw_data
+      - is_pulled
+      - load_dataset
+      - load_datasets
+      - mutate_data
+      - mutate_dataset
+      - mutate_join_keys
+      - resolve_delayed
+      - set_args
+      - set_keys
   - title: Helpers
     desc: Other useful functions for users and developers.
     contents:
-    - data_label
-    - data_label<-
-    - default_filter
-    - get_filter_expr
-    - get_key_duplicates
-    - get_key_duplicates.data.frame
-    - get_key_duplicates.TealDataset
-    - get_labels
-    - join_key
-    - join_keys
-    - log_app_usage
-    - no_selected_as_NULL
-    - python_code
-    - read_script
-    - split_by_sep
+      - data_label
+      - data_label<-
+      - default_filter
+      - get_filter_expr
+      - get_key_duplicates
+      - get_key_duplicates.data.frame
+      - get_key_duplicates.TealDataset
+      - get_labels
+      - join_key
+      - join_keys
+      - log_app_usage
+      - no_selected_as_NULL
+      - python_code
+      - read_script
+      - split_by_sep
   - title: For Developers
     subtitle: R6 Classes
     desc: Abstract and concrete classes used to build teal functionality.
     contents:
-    - CallableCode
-    - CallablePythonCode
-    - CDISCTealData
-    - CDISCTealDataConnector
-    - CDISCTealDataset
-    - CDISCTealDatasetConnector
-    - CDISCFilteredData
-    - CDISCFilteredDataset
-    - DefaultFilteredDataset
-    - FilteredData
-    - FilteredDataset
-    - JoinKeys
-    - MAEFilteredDataset
-    - MAETealDataset
-    - PythonCodeClass
-    - Queue
-    - TealData
-    - TealDataConnection
-    - TealDataConnector
-    - TealDataset
-    - TealDatasetConnector
+      - CallableCode
+      - CallablePythonCode
+      - CDISCTealData
+      - CDISCTealDataConnector
+      - CDISCTealDataset
+      - CDISCTealDatasetConnector
+      - CDISCFilteredData
+      - CDISCFilteredDataset
+      - DefaultFilteredDataset
+      - FilteredData
+      - FilteredDataset
+      - JoinKeys
+      - MAEFilteredDataset
+      - MAETealDataset
+      - PythonCodeClass
+      - Queue
+      - TealData
+      - TealDataConnection
+      - TealDataConnector
+      - TealDataset
+      - TealDatasetConnector
   - title: Logging
-    subtitle: Support for logging in a `teal` application
+    desc: Support for logging in a `teal` application
     contents:
-    - register_logger
+      - register_logger
   - title: Superseded
     contents:
-    - cdse_connection
-    - cdse_dataset_connector
-    - datasetdb_data
-    - datasetdb_connection
-    - datasetdb_dataset_connector
-    - ricepass_connection
-    - rice_connection
-    - rice_cdisc_dataset_connector
-    - rice_data
-    - rice_dataset_connector
-    - snowflake_connection
-    - snowflake_connection_function
-    - snowflake_data
-    - snowflake_dataset_connector
-    - teradata_cdisc_dataset_connector
-    - teradata_connection
-    - teradata_data
-    - teradata_dataset_connector
+      - cdse_connection
+      - cdse_dataset_connector
+      - datasetdb_data
+      - datasetdb_connection
+      - datasetdb_dataset_connector
+      - ricepass_connection
+      - rice_connection
+      - rice_cdisc_dataset_connector
+      - rice_data
+      - rice_dataset_connector
+      - snowflake_connection
+      - snowflake_connection_function
+      - snowflake_data
+      - snowflake_dataset_connector
+      - teradata_cdisc_dataset_connector
+      - teradata_connection
+      - teradata_data
+      - teradata_dataset_connector