check

.github/workflows/check.yaml

@@ -1,93 +1,103 @@
+
 ---
-name: Check 🛠
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: R-CMD-check-macos 📦
 
 on:
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
+  # 'push' events are triggered when commits
+  # are pushed to one of these branches
+  push:
     branches:
       - main
-  push:
+      - cran_mac
+    tags:
+      - "v*"
+  # 'pull_request' events are triggered when PRs are
+  # created against one of these target branches.
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
     branches:
       - main
+  # 'workflow_dispatch' gives you the ability
+  # to run this workflow on demand, anytime
   workflow_dispatch:
 
 jobs:
-  audit:
-    name: Audit Dependencies 🕵️‍♂️
-    uses: insightsengineering/r.pkg.template/.github/workflows/audit.yaml@main
-  r-cmd:
-    name: R CMD Check 🧬
-    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-    with:
-      additional-env-vars: |
-        _R_CHECK_CRAN_INCOMING_REMOTE_=false
-        _R_CHECK_EXAMPLE_TIMING_THRESHOLD_=10
-      additional-r-cmd-check-params: --as-cran
-      enforce-note-blocklist: true
-      note-blocklist: |
-        checking dependencies in R code .* NOTE
-        checking R code for possible problems .* NOTE
-        checking examples .* NOTE
-        checking Rd line widths .* NOTE
-        checking S3 generic/method consistency .* NOTE
-        checking Rd .usage sections .* NOTE
-        checking for unstated dependencies in vignettes .* NOTE
-        checking top-level files .* NOTE
-      unit-test-report-brand: >-
-        https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
-  coverage:
-    name: Coverage 📔
-    uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-  linter:
-    if: github.event_name != 'push'
-    name: SuperLinter 🦸‍♀️
-    uses: insightsengineering/r.pkg.template/.github/workflows/linter.yaml@main
-  roxygen:
-    name: Roxygen 🅾
-    uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-    with:
-      auto-update: true
-  gitleaks:
-    name: gitleaks 💧
-    uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
-  spelling:
-    name: Spell Check 🆎
-    uses: insightsengineering/r.pkg.template/.github/workflows/spelling.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-  links:
-    if: github.event_name != 'push'
-    name: Check URLs 🌐
-    uses: insightsengineering/r.pkg.template/.github/workflows/links.yaml@main
-  vbump:
-    name: Version Bump 🤜🤛
-    if: github.event_name == 'push'
-    uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
-  version:
-    name: Version Check 🏁
-    uses: insightsengineering/r.pkg.template/.github/workflows/version.yaml@main
-  licenses:
-    name: License Check 🃏
-    uses: insightsengineering/r.pkg.template/.github/workflows/licenses.yaml@main
-  style:
-    if: github.event_name != 'push'
-    name: Style Check 👗
-    uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
-    with:
-      auto-update: true
-  grammar:
-    if: github.event_name != 'push'
-    name: Grammar Check 🔤
-    uses: insightsengineering/r.pkg.template/.github/workflows/grammar.yaml@main
+  check:
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    runs-on: ${{ matrix.config.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - { os: macOS-14, r: "release" }
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+      _R_CHECK_FORCE_SUGGESTS_: FALSE
+      LC_CTYPE: en_GB.UTF-8
+      RMPI_TYPE: OPENMPI
+      R_BROWSER: false
+      R_PDFVIEWER: false
+      _R_CHECK_INSTALL_DEPENDS_: true
+      _R_CHECK_NO_RECOMMENDED_: true
+      _R_CHECK_TIMINGS_: 10
+      _R_CHECK_DEPRECATED_DEFUNCT_: true
+      _R_CHECK_CODE_ASSIGN_TO_GLOBALENV_: true
+      _R_CHECK_CODE_DATA_INTO_GLOBALENV_: true
+      _R_CHECK_SCREEN_DEVICE_: warn
+      _R_CHECK_S3_METHODS_NOT_REGISTERED_: true
+      _R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_: true
+      _R_CHECK_NATIVE_ROUTINE_REGISTRATION_: true
+      _R_CHECK_FF_CALLS_: registration
+      _R_CHECK_PRAGMAS_: true
+      _R_CHECK_COMPILATION_FLAGS_: true
+      _R_CHECK_COMPILATION_FLAGS_KNOWN_: "-Wconversion -Wno-sign-conversion"
+      _R_CHECK_THINGS_IN_TEMP_DIR_: true
+      _R_CHECK_THINGS_IN_TEMP_DIR_EXCLUDE_: "^(ompi|dsymutil)"
+      _R_CHECK_MATRIX_DATA_: TRUE
+      _R_CHECK_ORPHANED_: true
+      _R_CHECK_BROWSER_NONINTERACTIVE_: true
+      _R_CHECK_MBCS_CONVERSION_FAILURE_: true
+      _R_CHECK_RD_VALIDATE_RD2HTML_: true
+      _R_CHECK_RD_MATH_RENDERING_: true
+      _R_CHECK_VALIDATE_UTF8_: true
+      R_DEFAULT_INTERNET_TIMEOUT: 600
+      NOAWT: 1
+      RGL_USE_NULL: true
+      WNHOME:   /usr/local/wordnet-3.1
+      _R_CHECK_XREFS_USE_ALIASES_FROM_CRAN_:   TRUE
+      _R_CHECK_RD_VALIDATE_RD2HTML_:   true
+      _R_CHECK_RD_MATH_RENDERING_:   true
+      _R_CHECK_VIGNETTES_SKIP_RUN_MAYBE_:   true
+      _R_CHECK_TESTS_NLINES_: 0
+      _R_CHECK_VIGNETTES_NLINES_: 0
+
+    if: >
+      !contains(github.event.commits[0].message, '[skip checks]')
+    steps:
+      - name: Checkout repository 🛎
+        uses: actions/checkout@v4
+
+      - name: Install Pandoc
+        uses: r-lib/actions/setup-pandoc@v2
+
+      - name: Setup R 📊
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - name: Install R package dependencies 📦
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+
+      - name: Run R CMD check 🎯
+        uses: r-lib/actions/check-r-package@v2