add setup-r-dependencies (#289)

Related to insightsengineering/nestdevs-tasks#65 Switch to setup-r-dependencies. Added `teal.osprey` for lookup-refs. --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
insightsengineering · Dec 12, 2024 · 9cef89e · 9cef89e
1 parent 5aea1b5
commit 9cef89e
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Showing 9 changed files with 162 additions and 21 deletions.
diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
@@ -41,6 +41,21 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   r-cmd-non-cran:
     name: R CMD Check (non-CRAN) 🧬
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
@@ -62,6 +77,21 @@ jobs:
         checking Rd .usage sections .* NOTE
         checking for unstated dependencies in vignettes .* NOTE
         checking top-level files .* NOTE
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   coverage:
     name: Coverage 📔
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
@@ -70,6 +100,21 @@ jobs:
     with:
       additional-env-vars: |
         NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   linter:
     if: github.event_name != 'push'
     name: SuperLinter 🦸‍♀️
@@ -81,6 +126,21 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       auto-update: true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   gitleaks:
     name: gitleaks 💧
     uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main

diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml
@@ -42,3 +42,18 @@ jobs:
     with:
       default-landing-page: latest-tag
       additional-unit-test-report-directories: unit-test-report-non-cran
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
@@ -16,12 +16,43 @@ jobs:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
       default-landing-page: latest-tag
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   validation:
     name: R Package Validation report 📃
     needs: release
     uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   release:
     name: Create release 🎉
     uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
@@ -46,6 +77,21 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   coverage:
     name: Coverage 📔
     needs: [release, docs]
@@ -55,6 +101,21 @@ jobs:
     with:
       additional-env-vars: |
         NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/osprey
+        insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
+        insightsengineering/teal.reporter
+        insightsengineering/teal.widgets
+        insightsengineering/teal.transform
+        insightsengineering/teal
   wasm:
     name: Build WASM packages 🧑‍🏭
     needs: release

diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml
@@ -3,7 +3,7 @@ name: Scheduled 🕰️
 
 on:
   schedule:
-    - cron: '45 3 * * 0'
+    - cron: "45 3 * * 0"
   workflow_dispatch:
     inputs:
       chosen-workflow:
@@ -59,15 +59,18 @@ jobs:
     with:
       lookup-refs: |
         insightsengineering/osprey
-        insightsengineering/teal
-        insightsengineering/teal.transform
         insightsengineering/formatters
-        insightsengineering/teal.code
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
         insightsengineering/teal.logger
+        insightsengineering/teal.code
+        insightsengineering/teal.data
+        insightsengineering/teal.slice
         insightsengineering/teal.reporter
         insightsengineering/teal.widgets
-        insightsengineering/tern
-        insightsengineering/teal.data
+        insightsengineering/teal.transform
+        insightsengineering/teal
   rhub:
     if: >
       github.event_name == 'schedule' || (
@@ -79,13 +82,15 @@ jobs:
     with:
       lookup-refs: |
         insightsengineering/osprey
-        insightsengineering/teal
-        insightsengineering/teal.transform
         insightsengineering/formatters
+        insightsengineering/rtables
+        insightsengineering/rtables.officer
+        insightsengineering/tern
+        insightsengineering/teal.logger
         insightsengineering/teal.code
+        insightsengineering/teal.data
         insightsengineering/teal.slice
-        insightsengineering/teal.logger
         insightsengineering/teal.reporter
         insightsengineering/teal.widgets
-        insightsengineering/tern
-        insightsengineering/teal.data
+        insightsengineering/teal.transform
+        insightsengineering/teal
diff --git a/man/tm_g_butterfly.Rd b/man/tm_g_butterfly.Rd
diff --git a/man/tm_g_patient_profile.Rd b/man/tm_g_patient_profile.Rd
diff --git a/man/tm_g_spiderplot.Rd b/man/tm_g_spiderplot.Rd
diff --git a/man/tm_g_swimlane.Rd b/man/tm_g_swimlane.Rd
diff --git a/man/tm_g_waterfall.Rd b/man/tm_g_waterfall.Rd