add idling time

[BFalquet]

Increase timeout

══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-adtteSpec.R:229:3'): adtteSpecServer module works as expected in the test app ──
  Error in `app_wait_for_idle(self, private, duration = duration, timeout = timeout)`: An error occurred while waiting for Shiny to be stable
  Backtrace:
      ▆
   1. └─app$wait_for_idle() at test-adtteSpec.R:229:3
   2.   └─shinytest2:::app_wait_for_idle(self, private, duration = duration, timeout = timeout)
   3.     └─shinytest2:::app_abort(self, private, "An error occurred while waiting for Shiny to be stable")
   4.       └─rlang::abort(..., app = self, call = call)
  ── Failure ('test-assaySpec.R:39:3'): assaySpecServer module works as expected in the test app ──
  res$message (`actual`) not identical to "No assays eligible for this experiment, please make sure to add normalized assays" (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('No assays eligible for this experiment, please make sure to add normalized assays')
  ── Failure ('test-assaySpec.R:46:3'): assaySpecServer module works as expected in the test app ──
  `res` (`actual`) not identical to "rpkm" (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('rpkm')
  ── Failure ('test-assaySpec.R:49:3'): assaySpecServer module works as expected in the test app ──
  `res` (`actual`) not identical to "[1] \"rpkm\"" (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('[1] "rpkm"')
  ── Failure ('test-assaySpec.R:54:3'): assaySpecServer module works as expected in the test app ──
  `res` (`actual`) not identical to "[1] \"voom\"" (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('[1] "voom"')
  ── Failure ('test-assaySpec.R:60:3'): assaySpecServer module works as expected in the test app ──
  `res` (`actual`) not identical to "[1] \"\"" (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('[1] ""')
  ── Error ('test-pca.R:66:3'): pca module works as expected in the test app ─────
  Error in `app_wait_for_idle(self, private, duration = duration, timeout = timeout)`: An error occurred while waiting for Shiny to be stable
  Backtrace:
      ▆
   1. └─app$wait_for_idle() at test-pca.R:66:3
   2.   └─shinytest2:::app_wait_for_idle(self, private, duration = duration, timeout = timeout)
   3.     └─shinytest2:::app_abort(self, private, "An error occurred while waiting for Shiny to be stable")
   4.       └─rlang::abort(..., app = self, call = call)
  ── Failure ('test-scatterplot.R:72:3'): scatterplot module works as expected in the test app ──
  `res` (`actual`) not identical to "GeneID:503538" (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('GeneID:503538')
  ── Error ('test-scatterplot.R:78:3'): scatterplot module works as expected in the test app ──
  Error in `app_wait_for_idle(self, private, duration = duration, timeout = timeout)`: An error occurred while waiting for Shiny to be stable
  Backtrace:
      ▆
   1. └─app$wait_for_idle() at test-scatterplot.R:78:3
   2.   └─shinytest2:::app_wait_for_idle(self, private, duration = duration, timeout = timeout)
   3.     └─shinytest2:::app_abort(self, private, "An error occurred while waiting for Shiny to be stable")
   4.       └─rlang::abort(..., app = self, call = call)
  
  [ FAIL 9 | WARN 0 | SKIP 0 | PASS 171 ]

[github-actions]

Code Coverage Summary

Filename              Stmts    Miss  Cover    Missing
------------------  -------  ------  -------  ------------------------------------------------------------------------------------------------------------------------------------
R/adtteSpec.R           171     124  27.49%   253-401
R/assaySpec.R            54      40  25.93%   104-147
R/barplot.R             188     152  19.15%   39-66, 129-280
R/boxplot.R             190     159  16.32%   40-67, 125-279
R/checkmate.R            18       9  50.00%   110-118
R/experimentSpec.R       91      58  36.26%   97, 215-284
R/forestplot.R          214     186  13.08%   58-92, 152-327
R/geneSpec.R            257     154  40.08%   154-169, 296-481
R/km.R                  208     174  16.35%   61-92, 156-326
R/pca.R                 367     284  22.62%   34-56, 165-477
R/quality.R             320     247  22.81%   18-110, 208-454
R/sampleVarSpec.R       237     105  55.70%   291, 300, 319-328, 334-341, 343, 351-363, 365-366, 368, 371, 379-383, 385-400, 405-429, 432-436, 438, 445-455, 457-458, 466, 511-528
R/scatterplot.R         181     148  18.23%   39-65, 127-273
R/utils.R                16       0  100.00%
R/volcanoplot.R         204     174  14.71%   34-57, 113-293
R/zzz.R                   2       2  0.00%    2-3
TOTAL                  2718    2016  25.83%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 426f29e

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

 1 files  15 suites   8s ⏱️
56 tests 43 ✅ 13 💤 0 ❌
94 runs  81 ✅ 13 💤 0 ❌

Results for commit 426f29e.

♻️ This comment has been updated with latest results.