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adapt timeout #376

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merged 2 commits into from
Apr 2, 2024
Merged

adapt timeout #376

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eb04a33
adapt timeout
Apr 2, 2024
f86e3f1
import utils
Apr 2, 2024
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3 changes: 2 additions & 1 deletion DESCRIPTION
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Expand Up @@ -52,7 +52,8 @@ Imports:
teal.logger (>= 0.1.3.9013),
teal.reporter (>= 0.2.0),
teal.widgets (>= 0.4.0),
tern (>= 0.7.10)
tern (>= 0.7.10),
utils
Suggests:
BiocStyle,
covr,
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1 change: 1 addition & 0 deletions NAMESPACE
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Expand Up @@ -73,3 +73,4 @@ import(teal.data)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,setListElement)
importFrom(lifecycle,deprecate_soft)
importFrom(utils,str)
2 changes: 1 addition & 1 deletion R/barplot.R
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Expand Up @@ -201,7 +201,7 @@ srv_g_barplot <- function(id,

if (.test) {
table_r <- reactive({
str(layer_data(plot_r()))
utils::str(layer_data(plot_r()))
})
output$table <- renderPrint(table_r())
}
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2 changes: 1 addition & 1 deletion R/boxplot.R
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Expand Up @@ -195,7 +195,7 @@ srv_g_boxplot <- function(id,

if (.test) {
table_r <- reactive({
str(layer_data(plot_r()))
utils::str(layer_data(plot_r()))
})
output$table <- renderPrint(table_r())
}
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1 change: 1 addition & 0 deletions R/package.R
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Expand Up @@ -10,4 +10,5 @@
#' @import teal teal.data
#' @importFrom S4Vectors setListElement DataFrame
#' @importFrom lifecycle deprecate_soft
#' @importFrom utils str
NULL
4 changes: 2 additions & 2 deletions tests/testthat/test-pca.R
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Expand Up @@ -97,7 +97,7 @@ test_that("pca module works as expected in the test app", {
)

# Now update experiment name, assay name, cluster & matrix option on correlation tab.
app$set_inputs(!!ns("experiment-name") := "hd2")
app$set_inputs(!!ns("experiment-name") := "hd2", timeout_ = 30000)
app$set_inputs(!!ns("assay-name") := "voom")
app$set_inputs(!!ns("cluster_columns") := TRUE)
app$set_inputs(!!ns("show_matrix") := FALSE)
Expand All @@ -117,7 +117,7 @@ test_that("pca module works as expected in the test app", {
app$set_inputs(!!ns("var_pct") := FALSE)
app$set_inputs(!!ns("label") := FALSE)

app$wait_for_idle()
app$wait_for_idle(timeout = 30000)
res <- app$get_value(output = ns("test_pca"))
expect_snapshot(
cat(res)
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