503 shinytest2 : migrate test to shinytest2 using TealAppDriver

[kartikeyakirar]

part of https://github.com/insightsengineering/coredev-tasks/issues/503

• Test if the example for the modules tm_* can be run without shiny errors
• Test if the sample_tm_* can be run without shiny errors
• Test if the examples these helper shiny modules can be run without shiny errors
• adtteSpec
• assaySpec
• experimentSpec
• geneSpec
• sampleVarSpec

[github-actions]

Code Coverage Summary

Filename              Stmts    Miss  Cover    Missing
------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------------------------------
R/adtteSpec.R           170     123  27.65%   253-400
R/assaySpec.R            53      39  26.42%   104-146
R/barplot.R             187     151  19.25%   39-66, 129-279
R/boxplot.R             189     158  16.40%   40-67, 125-278
R/checkmate.R            18       9  50.00%   110-118
R/experimentSpec.R       90      57  36.67%   97, 215-283
R/forestplot.R          213     185  13.15%   58-92, 152-326
R/geneSpec.R            256     153  40.23%   154-169, 296-480
R/km.R                  207     173  16.43%   61-92, 156-325
R/pca.R                 366     283  22.68%   34-56, 165-476
R/quality.R             319     246  22.88%   18-110, 208-453
R/sampleVarSpec.R       236     104  55.93%   299, 318-327, 333-340, 342, 350-362, 364-365, 367, 370, 378-382, 384-399, 404-428, 431-435, 437, 444-454, 456-457, 465, 510-527
R/scatterplot.R         180     147  18.33%   39-65, 127-272
R/utils.R                16       0  100.00%
R/volcanoplot.R         203     173  14.78%   34-57, 113-292
R/zzz.R                   2       2  0.00%    2-3
TOTAL                  2705    2003  25.95%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: fb6f8e3

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

  1 files   16 suites   11s ⏱️
 56 tests  43 ✅ 13 💤 0 ❌
538 runs  525 ✅ 13 💤 0 ❌

Results for commit fb6f8e3.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
shinytest2-adtteSpec	👶		$+0.01$	$+1$	$+1$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
adtteSpec	💀	$0.03$	$-0.03$	adtteSpecServer_module_works_as_expected_in_the_test_app
shinytest2-adtteSpec	👶		$+0.01$	adtteSpecServer_module_works_as_expected_in_the_test_app

Results for commit 0a542d1

♻️ This comment has been updated with latest results.

[danielinteractive]

Hi @kartikeyakirar , what is the state of this PR?

[kartikeyakirar]

Hey @danielinteractive,
cc @donyunardi

Just wanted to update you on a couple of PRs:

https://github.com/insightsengineering/teal.modules.helios/pull/130
#375
Both were aimed at modifying shiny test2 using tealAppDriver. However, they're currently on hold due to discussions regarding the addition of a method for selecting MAE dataset in insightsengineering/teal#1190. It was decided later that this wouldn't be part of tealAppDriver and will instead be tested in teal.slice itself.

we're prioritized the addition of shinytest2 in tmc and tmg. I'll be picking these PRs back up shortly, but until then, they're on hold.