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feat: setup shinytest2 for tm_t_coxreg
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app_driver_tm_t_coxreg <- function() { | ||
# TODO: Check if data fabrication is needed for Cox regression | ||
data <- teal_data() | ||
data <- within(data, { | ||
ADSL <- teal.data::rADSL | ||
ADTTE <- teal.data::rADTTE | ||
}) | ||
datanames <- c("ADSL", "ADTTE") | ||
teal.data::datanames(data) <- datanames | ||
teal.data::join_keys(data) <- teal.data::default_cdisc_join_keys[datanames] | ||
|
||
arm_ref_comp <- list( | ||
ACTARMCD = list( | ||
ref = "ARM B", | ||
comp = c("ARM A", "ARM C") | ||
), | ||
ARM = list( | ||
ref = "B: Placebo", | ||
comp = c("A: Drug X", "C: Combination") | ||
) | ||
) | ||
|
||
init_teal_app_driver( | ||
data = data, | ||
modules = tm_t_coxreg( | ||
label = "Cox Reg.", | ||
dataname = "ADTTE", | ||
arm_var = teal.transform::choices_selected(c("ARM", "ARMCD", "ACTARMCD"), "ARM"), | ||
arm_ref_comp = arm_ref_comp, | ||
paramcd = teal.transform::choices_selected( | ||
teal.transform::value_choices(data[["ADTTE"]], "PARAMCD", "PARAM"), "OS" | ||
), | ||
strata_var = teal.transform::choices_selected( | ||
c("COUNTRY", "STRATA1", "STRATA2"), "STRATA1" | ||
), | ||
cov_var = teal.transform::choices_selected( | ||
c("AGE", "BMRKR1", "BMRKR2", "REGION1"), "AGE" | ||
), | ||
multivariate = TRUE | ||
) | ||
) | ||
} | ||
|
||
testthat::test_that("e2e - tm_t_coxreg: Module initializes in teal without errors and produces table output.", { | ||
skip_if_too_deep(5) | ||
app_driver <- app_driver_tm_t_coxreg() | ||
app_driver$expect_no_shiny_error() | ||
app_driver$expect_no_validation_error() | ||
testthat::expect_true( | ||
app_driver$is_visible(app_driver$active_module_element("table-table-with-settings")) | ||
) | ||
app_driver$stop() | ||
}) | ||
|
||
testthat::test_that( | ||
"e2e - tm_t_coxreg: Starts with specified label, type, paramcd, arm_var, buckets, | ||
cov_var, strata_var, pval_method, ties, conf_level, combine_comp_arms.", | ||
{ | ||
skip_if_too_deep(5) | ||
app_driver <- app_driver_tm_t_coxreg() | ||
testthat::expect_equal( | ||
app_driver$get_text("#teal-main_ui-root-active_tab > li.active > a"), | ||
"Cox Reg." | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("type"), | ||
"Multivariate" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("paramcd-dataset_ADTTE_singleextract-filter1-vals"), | ||
"OS" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("arm_var-dataset_ADSL_singleextract-select"), | ||
"ARM" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("buckets"), | ||
list( | ||
Ref = list("B: Placebo"), | ||
Comp = list("A: Drug X", "C: Combination") | ||
) | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("cov_var-dataset_ADSL_singleextract-select"), | ||
"AGE" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("strata_var-dataset_ADSL_singleextract-select"), | ||
"STRATA1" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("pval_method"), | ||
"wald" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("ties"), | ||
"exact" | ||
) | ||
testthat::expect_equal( | ||
app_driver$get_active_module_input("conf_level"), | ||
"0.95" | ||
) | ||
testthat::expect_false(app_driver$get_active_module_input("combine_comp_arms")) | ||
app_driver$stop() | ||
} | ||
) |