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add setup-r-dependencies (#1297)
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insightsengineering/nestdevs-tasks#65
Switch to setup-r-dependencies.
Added `teal.modules.clinical` for lookup-refs.
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@vedhav
vedhav authored Dec 11, 2024
1 parent 389eb12 commit dda59c1
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76 changes: 76 additions & 0 deletions .github/workflows/check.yaml
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Expand Up @@ -41,6 +41,25 @@ jobs:
checking top-level files .* NOTE
unit-test-report-brand: >-
https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
r-cmd-non-cran:
name: R CMD Check (non-CRAN) 🧬
uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
Expand All @@ -61,6 +80,25 @@ jobs:
checking Rd .usage sections .* NOTE
checking for unstated dependencies in vignettes .* NOTE
checking top-level files .* NOTE
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
coverage:
name: Coverage 📔
uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
Expand All @@ -69,6 +107,25 @@ jobs:
with:
additional-env-vars: |
NOT_CRAN=true
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
linter:
if: github.event_name != 'push'
name: SuperLinter 🦸‍♀️
Expand All @@ -80,6 +137,25 @@ jobs:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
auto-update: true
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
gitleaks:
name: gitleaks 💧
uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
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19 changes: 19 additions & 0 deletions .github/workflows/docs.yaml
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Expand Up @@ -42,3 +42,22 @@ jobs:
with:
default-landing-page: latest-tag
additional-unit-test-report-directories: unit-test-report-non-cran
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
77 changes: 77 additions & 0 deletions .github/workflows/release.yaml
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Expand Up @@ -16,12 +16,51 @@ jobs:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
default-landing-page: latest-tag
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
validation:
name: R Package Validation report 📃
needs: release
uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
secrets:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
release:
name: Create release 🎉
uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
Expand All @@ -46,6 +85,25 @@ jobs:
checking top-level files .* NOTE
unit-test-report-brand: >-
https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
coverage:
name: Coverage 📔
needs: [release, docs]
Expand All @@ -55,6 +113,25 @@ jobs:
with:
additional-env-vars: |
NOT_CRAN=true
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
wasm:
name: Build WASM packages 🧑‍🏭
needs: release
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23 changes: 21 additions & 2 deletions .github/workflows/scheduled.yaml
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Expand Up @@ -3,7 +3,7 @@ name: Scheduled 🕰️

on:
schedule:
- cron: '45 3 * * 0'
- cron: "45 3 * * 0"
workflow_dispatch:
inputs:
chosen-workflow:
Expand Down Expand Up @@ -56,6 +56,23 @@ jobs:
)
name: revdepcheck ↩️
uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main
with:
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
rhub:
if: >
github.event_name == 'schedule' || (
Expand All @@ -70,12 +87,14 @@ jobs:
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.slice
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm

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