Skip to content

Commit

Permalink
Wave 5 - tm_t_events_patyear shinytests (#1159)
Browse files Browse the repository at this point in the history
Part of #1108

---------

Co-authored-by: unknown <[email protected]>
  • Loading branch information
vedhav and kartikeyakirar authored May 7, 2024
1 parent 8e60fb3 commit a967457
Showing 1 changed file with 161 additions and 0 deletions.
161 changes: 161 additions & 0 deletions tests/testthat/test-shinytest2-tm_t_events_patyear.R
Original file line number Diff line number Diff line change
@@ -0,0 +1,161 @@
app_driver_tm_t_events_patyear <- function() {
data <- teal.data::teal_data()
data <- within(data, {
library(dplyr)
ADSL <- tmc_ex_adsl
ADAETTE <- tmc_ex_adaette %>% # nolint object_name
filter(PARAMCD %in% c("AETTE1", "AETTE2", "AETTE3")) %>%
mutate(is_event = CNSR == 0) %>%
mutate(n_events = as.integer(is_event))
})

datanames <- c("ADSL", "ADAETTE")
teal.data::datanames(data) <- datanames
teal.data::join_keys(data) <- teal.data::default_cdisc_join_keys[datanames]

init_teal_app_driver(
data = data,
modules = tm_t_events_patyear(
label = "AE Rate Adjusted for Patient-Years At Risk Table",
dataname = "ADAETTE",
parentname = "ADSL",
arm_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADSL"]], c("ARM", "ARMCD")),
selected = "ARMCD"
),
add_total = TRUE,
events_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADAETTE"]], "n_events"),
selected = "n_events",
fixed = TRUE
),
paramcd = teal.transform::choices_selected(
choices = teal.transform::value_choices(data[["ADAETTE"]], "PARAMCD", "PARAM"),
selected = "AETTE1"
),
conf_level = teal.transform::choices_selected(
c(2, 0.95, 0.9, 0.8), 0.95,
keep_order = TRUE
),
aval_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADAETTE"]], "AVAL"),
selected = "AVAL", fixed = TRUE
),
avalu_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADAETTE"]], "AVALU"),
selected = "AVALU", fixed = TRUE
),
total_label = default_total_label(),
na_level = default_na_str(),
drop_arm_levels = TRUE,
pre_output = NULL,
post_output = NULL,
basic_table_args = teal.widgets::basic_table_args()
)
)
}

testthat::test_that("e2e - tm_t_events_patyear: Module initializes in teal without errors and produces table output.", {
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_events_patyear()
app_driver$expect_no_shiny_error()
app_driver$expect_no_validation_error()
testthat::expect_true(
app_driver$is_visible(app_driver$active_module_element("patyear_table-table-with-settings"))
)
app_driver$stop()
})

testthat::test_that(
"e2e - tm_t_events_patyear: Starts with specified label, arm_var, paramcd, conf_level,
conf_method, num_pt_year, input_time_unit, add_total, drop_arm_levels.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_events_patyear()
testthat::expect_equal(
app_driver$get_text("#teal-main_ui-root-active_tab > li.active > a"),
"AE Rate Adjusted for Patient-Years At Risk Table"
)
testthat::expect_equal(
app_driver$get_active_module_input("arm_var-dataset_ADSL_singleextract-select"),
"ARMCD"
)
testthat::expect_equal(
app_driver$get_active_module_input("paramcd-dataset_ADAETTE_singleextract-filter1-vals"),
"AETTE1"
)
testthat::expect_equal(
app_driver$get_active_module_input("conf_level"),
"0.95"
)
testthat::expect_equal(
app_driver$get_active_module_input("conf_method"),
"Normal (rate)"
)
testthat::expect_equal(
app_driver$get_active_module_input("num_pt_year"),
"100"
)
testthat::expect_equal(
app_driver$get_active_module_input("input_time_unit"),
"year"
)
testthat::expect_true(app_driver$get_active_module_input("add_total"))
testthat::expect_true(app_driver$get_active_module_input("drop_arm_levels"))
app_driver$stop()
}
)

testthat::test_that(
"e2e - tm_t_events_patyear: Selecting paramcd-level changes the table and does not throw validation errors.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_events_patyear()
table_before <- app_driver$get_active_module_tws_output("patyear_table")
app_driver$set_active_module_input("paramcd-dataset_ADAETTE_singleextract-filter1-vals", "AETTE2")
testthat::expect_false(identical(table_before, app_driver$get_active_module_tws_output("patyear_table")))
app_driver$expect_no_validation_error()
app_driver$stop()
}
)

testthat::test_that("e2e - tm_t_events_patyear: Deselection of paramcd-level throws validation error.", {
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_events_patyear()
app_driver$set_active_module_input("paramcd-dataset_ADAETTE_singleextract-filter1-vals", NULL)
testthat::expect_identical(app_driver$get_active_module_tws_output("patyear_table"), data.frame())
app_driver$expect_validation_error()
testthat::expect_equal(
app_driver$active_module_element_text(
"paramcd-dataset_ADAETTE_singleextract-filter1-vals_input .shiny-validation-message"
),
"A Event Type Parameter is required"
)
app_driver$stop()
})

testthat::test_that(
"e2e - tm_t_events_patyear: Selecting arm_var-variable changes the table and does not throw validation errors.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_events_patyear()
table_before <- app_driver$get_active_module_tws_output("patyear_table")
app_driver$set_active_module_input("arm_var-dataset_ADSL_singleextract-select", "ARM")
testthat::expect_false(identical(table_before, app_driver$get_active_module_tws_output("patyear_table")))
app_driver$expect_no_validation_error()
app_driver$stop()
}
)

testthat::test_that("e2e - tm_t_events_patyear: Deselection of arm_var-variable throws validation error.", {
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_events_patyear()
app_driver$set_active_module_input("arm_var-dataset_ADSL_singleextract-select", NULL)
testthat::expect_identical(app_driver$get_active_module_tws_output("patyear_table"), data.frame())
app_driver$expect_validation_error()
testthat::expect_equal(
app_driver$active_module_element_text("arm_var-dataset_ADSL_singleextract-select_input .shiny-validation-message"),
"Please select exactly 1 or 2 treatment variables"
)
app_driver$stop()
})

0 comments on commit a967457

Please sign in to comment.