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insightsengineering · Dec 19, 2024 · a574d34 · a574d34
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diff --git a/main/404.html b/main/404.html
@@ -1,5 +1,4 @@
-<!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
+<html lang="en">
 <head>
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
 <meta charset="utf-8">
@@ -49,7 +48,19 @@
     <li><a class="dropdown-item" href="https://insightsengineering.github.io/teal.modules.clinical/unit-test-report-non-cran/">Non-CRAN unit test report</a></li>
   </ul>
 </li>
-      </ul>
+      <div><li class="nav-item dropdown">
+    <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-versions">Versions</a>
+    <div class="dropdown-menu" aria-labelledby="dropdown-versions">
+    <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.9.1">v0.9.1</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.9.0">v0.9.0</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.16">v0.8.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.15">v0.8.15</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.14">v0.8.14</a>
+</div>
+</li></div>
+</ul>
 <ul class="navbar-nav">
 <li class="nav-item"><form class="form-inline" role="search">
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diff --git a/main/CODE_OF_CONDUCT.html b/main/CODE_OF_CONDUCT.html
diff --git a/main/CONTRIBUTING.html b/main/CONTRIBUTING.html
diff --git a/main/LICENSE-text.html b/main/LICENSE-text.html
@@ -1,5 +1,19 @@
-<!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>License • teal.modules.clinical</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="License"><link rel="stylesheet" href="consent.css"><script src="consent.js" type="text/javascript" charset="utf-8"></script></head><body>
+<html lang="en">
+<head>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<meta charset="utf-8">
+<meta http-equiv="X-UA-Compatible" content="IE=edge">
+<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<title>License • teal.modules.clinical</title>
+<script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
+<script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
+<link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet">
+<script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="License">
+<link rel="stylesheet" href="consent.css">
+<script src="consent.js" type="text/javascript" charset="utf-8"></script>
+</head>
+<body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -15,24 +29,45 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/teal-modules-clinical.html">Get started</a></li>
+      <ul class="navbar-nav me-auto">
+<li class="nav-item"><a class="nav-link" href="articles/teal-modules-clinical.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item dropdown">
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
-  <ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="articles/generate_tmc_test_data.html">Example Data Generation</a></li>
+  <ul class="dropdown-menu" aria-labelledby="dropdown-articles">
+<li><a class="dropdown-item" href="articles/generate_tmc_test_data.html">Example Data Generation</a></li>
     <li><a class="dropdown-item" href="articles/quickstart_substitute.html">Quick start: `substitute` for NSE</a></li>
-  </ul></li>
+  </ul>
+</li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
-  <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
+  <ul class="dropdown-menu" aria-labelledby="dropdown-reports">
+<li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
     <li><a class="dropdown-item" href="unit-test-report-non-cran/">Non-CRAN unit test report</a></li>
-  </ul></li>
-      </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
- <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json"></form></li>
+  </ul>
+</li>
+      <div><li class="nav-item dropdown">
+    <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-versions">Versions</a>
+    <div class="dropdown-menu" aria-labelledby="dropdown-versions">
+    <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.9.1">v0.9.1</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.9.0">v0.9.0</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.16">v0.8.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.15">v0.8.15</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.14">v0.8.14</a>
+</div>
+</li></div>
+</ul>
+<ul class="navbar-nav">
+<li class="nav-item"><form class="form-inline" role="search">
+ <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json">
+</form></li>
 <li class="nav-item"><a class="external-link nav-link" href="https://github.com/insightsengineering/teal.modules.clinical"><span class="fa fa-github"></span></a></li>
-      </ul></div>
+      </ul>
+</div>
 
 
   </div>
@@ -59,17 +94,19 @@ <h1>License</h1>
 limitations under the License.
 </pre>
 
-  </main></div>
+  </main>
+</div>
 
 
     <footer><div class="nest">
   <p>teal.modules.clinical is a part of the <strong>NEST</strong> and <a href="https://pharmaverse.org/" class="external-link"><strong>pharmaverse</strong></a>.</p>
 </div>
-<script type="text/javascript" src="analytics.js"></script></footer></div>
-
+<script type="text/javascript" src="analytics.js"></script></footer>
+</div>
 
 
 
 
-  </body></html>
 
+  </body>
+</html>
diff --git a/main/SECURITY.html b/main/SECURITY.html
@@ -1,5 +1,19 @@
-<!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Security Policy • teal.modules.clinical</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Security Policy"><link rel="stylesheet" href="consent.css"><script src="consent.js" type="text/javascript" charset="utf-8"></script></head><body>
+<html lang="en">
+<head>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<meta charset="utf-8">
+<meta http-equiv="X-UA-Compatible" content="IE=edge">
+<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<title>Security Policy • teal.modules.clinical</title>
+<script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
+<script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
+<link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet">
+<script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Security Policy">
+<link rel="stylesheet" href="consent.css">
+<script src="consent.js" type="text/javascript" charset="utf-8"></script>
+</head>
+<body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -15,24 +29,45 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/teal-modules-clinical.html">Get started</a></li>
+      <ul class="navbar-nav me-auto">
+<li class="nav-item"><a class="nav-link" href="articles/teal-modules-clinical.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item dropdown">
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
-  <ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="articles/generate_tmc_test_data.html">Example Data Generation</a></li>
+  <ul class="dropdown-menu" aria-labelledby="dropdown-articles">
+<li><a class="dropdown-item" href="articles/generate_tmc_test_data.html">Example Data Generation</a></li>
     <li><a class="dropdown-item" href="articles/quickstart_substitute.html">Quick start: `substitute` for NSE</a></li>
-  </ul></li>
+  </ul>
+</li>
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
 <li class="nav-item dropdown">
   <button class="nav-link dropdown-toggle" type="button" id="dropdown-reports" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Reports</button>
-  <ul class="dropdown-menu" aria-labelledby="dropdown-reports"><li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
+  <ul class="dropdown-menu" aria-labelledby="dropdown-reports">
+<li><a class="dropdown-item" href="coverage-report/">Coverage report</a></li>
     <li><a class="dropdown-item" href="unit-test-report/">Unit test report</a></li>
     <li><a class="dropdown-item" href="unit-test-report-non-cran/">Non-CRAN unit test report</a></li>
-  </ul></li>
-      </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
- <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json"></form></li>
+  </ul>
+</li>
+      <div><li class="nav-item dropdown">
+    <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-versions">Versions</a>
+    <div class="dropdown-menu" aria-labelledby="dropdown-versions">
+    <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/main">main</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/latest-tag">latest-tag</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.9.1">v0.9.1</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.9.0">v0.9.0</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.16">v0.8.16</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.15">v0.8.15</a>
+<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.modules.clinical/v0.8.14">v0.8.14</a>
+</div>
+</li></div>
+</ul>
+<ul class="navbar-nav">
+<li class="nav-item"><form class="form-inline" role="search">
+ <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json">
+</form></li>
 <li class="nav-item"><a class="external-link nav-link" href="https://github.com/insightsengineering/teal.modules.clinical"><span class="fa fa-github"></span></a></li>
-      </ul></div>
+      </ul>
+</div>
 
 
   </div>
@@ -47,38 +82,44 @@ <h1>Security Policy</h1>
 <div id="security-policy" class="section level1">
 
 <div class="section level2">
-<h2 id="reporting-security-issues">Reporting Security Issues<a class="anchor" aria-label="anchor" href="#reporting-security-issues"></a></h2>
+<h2 id="reporting-security-issues">Reporting Security Issues<a class="anchor" aria-label="anchor" href="#reporting-security-issues"></a>
+</h2>
 <p>If you believe you have found a security vulnerability in any of the repositories in this organization, please report it to us through coordinated disclosure.</p>
 <p><strong>Please do not report security vulnerabilities through public GitHub issues, discussions, or pull requests.</strong></p>
 <p>Instead, please send an email to vulnerability.management[@]roche.com.</p>
 <p>Please include as much of the information listed below as you can to help us better understand and resolve the issue:</p>
-<ul><li>The type of issue (e.g., buffer overflow, SQL injection, or cross-site scripting)</li>
+<ul>
+<li>The type of issue (e.g., buffer overflow, SQL injection, or cross-site scripting)</li>
 <li>Full paths of source file(s) related to the manifestation of the issue</li>
 <li>The location of the affected source code (tag/branch/commit or direct URL)</li>
 <li>Any special configuration required to reproduce the issue</li>
 <li>Step-by-step instructions to reproduce the issue</li>
 <li>Proof-of-concept or exploit code (if possible)</li>
 <li>Impact of the issue, including how an attacker might exploit the issue</li>
-</ul><p>This information will help us triage your report more quickly.</p>
+</ul>
+<p>This information will help us triage your report more quickly.</p>
 </div>
 <div class="section level2">
-<h2 id="data-security-standards-dss">Data Security Standards (DSS)<a class="anchor" aria-label="anchor" href="#data-security-standards-dss"></a></h2>
+<h2 id="data-security-standards-dss">Data Security Standards (DSS)<a class="anchor" aria-label="anchor" href="#data-security-standards-dss"></a>
+</h2>
 <p>Please make sure that while reporting issues in the form a bug, feature, or pull request, <em>all</em> sensitive information such as <a href="https://www.dhs.gov/privacy-training/what-personally-identifiable-information" class="external-link">PII</a>, <a href="https://www.hhs.gov/hipaa/for-professionals/security/laws-regulations/index.html" class="external-link">PHI</a>, and <a href="https://www.pcisecuritystandards.org/pci_security/standards_overview" class="external-link">PCI</a> is completely removed from any text and attachments, including pictures and videos.</p>
 </div>
 </div>
 
   </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
-    </nav></aside></div>
+    </nav></aside>
+</div>
 
 
     <footer><div class="nest">
   <p>teal.modules.clinical is a part of the <strong>NEST</strong> and <a href="https://pharmaverse.org/" class="external-link"><strong>pharmaverse</strong></a>.</p>
 </div>
-<script type="text/javascript" src="analytics.js"></script></footer></div>
-
+<script type="text/javascript" src="analytics.js"></script></footer>
+</div>
 
 
 
 
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+  </body>
+</html>