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Wave 7 - tm_t_shift_by_grade shinytests (#1170)
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Part of #1108

---------

Signed-off-by: Vedha Viyash <[email protected]>
Co-authored-by: unknown <[email protected]>
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@vedhav @kartikeyakirar
vedhav and kartikeyakirar authored May 7, 2024
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app_driver_tm_t_shift_by_grade <- function() {
data <- teal.data::teal_data()
data <- within(data, {
ADSL <- teal.data::rADSL
ADLB <- teal.data::rADLB
})

datanames <- c("ADSL", "ADLB")
teal.data::datanames(data) <- datanames
teal.data::join_keys(data) <- teal.data::default_cdisc_join_keys[datanames]

init_teal_app_driver(
data = data,
modules = tm_t_shift_by_grade(
label = "Grade Laboratory Abnormality Table",
dataname = "ADLB",
parentname = "ADSL",
visit_var = teal.transform::choices_selected(
teal.transform::variable_choices(data[["ADLB"]], subset = "AVISIT"),
selected = "AVISIT", fixed = TRUE
),
arm_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADLB"]], subset = c("ARM", "ARMCD")),
selected = "ARM"
),
paramcd = teal.transform::choices_selected(
choices = teal.transform::value_choices(data[["ADLB"]], "PARAMCD", "PARAM"),
selected = "ALT"
),
worst_flag_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(
data[["ADLB"]],
subset = c("WGRLOVFL", "WGRLOFL", "WGRHIVFL", "WGRHIFL")
),
selected = c("WGRLOVFL")
),
worst_flag_indicator = teal.transform::choices_selected(
teal.transform::value_choices(data[["ADLB"]], "WGRLOVFL"),
selected = "Y", fixed = TRUE
),
anl_toxgrade_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADLB"]], subset = c("ATOXGR")),
selected = c("ATOXGR"),
fixed = TRUE
),
base_toxgrade_var = teal.transform::choices_selected(
choices = teal.transform::variable_choices(data[["ADLB"]], subset = c("BTOXGR")),
selected = c("BTOXGR"),
fixed = TRUE
),
id_var = teal.transform::choices_selected(
teal.transform::variable_choices(data[["ADLB"]], subset = "USUBJID"),
selected = "USUBJID", fixed = TRUE
),
add_total = FALSE,
total_label = default_total_label(),
drop_arm_levels = TRUE,
pre_output = NULL,
post_output = NULL,
na_level = default_na_str(),
code_missing_baseline = FALSE,
basic_table_args = teal.widgets::basic_table_args()
),
filter = teal::teal_slices(teal_slice("ADSL", "SAFFL", selected = "Y"))
)
}

testthat::test_that(
"e2e - tm_t_shift_by_grade: Module initializes in teal without errors and produces table output.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
app_driver$expect_no_shiny_error()
app_driver$expect_no_validation_error()
testthat::expect_true(
app_driver$is_visible(app_driver$active_module_element("table-table-with-settings"))
)
app_driver$stop()
}
)

testthat::test_that(
"e2e - tm_t_shift_by_grade: Starts with specified label, arm_var, paramcd, worst_flag_var, anl_toxgrade_var,
base_toxgrade_var, worst_flag_indicator, add_total, drop_arm_levels, code_missing_baseline.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
testthat::expect_equal(
app_driver$get_text("#teal-main_ui-root-active_tab > li.active > a"),
"Grade Laboratory Abnormality Table"
)
testthat::expect_equal(
app_driver$get_active_module_input("arm_var-dataset_ADSL_singleextract-select"),
"ARM"
)
testthat::expect_equal(
app_driver$get_active_module_input("paramcd-dataset_ADLB_singleextract-filter1-vals"),
"ALT"
)
testthat::expect_equal(
app_driver$get_active_module_input("worst_flag_var-dataset_ADLB_singleextract-select"),
"WGRLOVFL"
)
testthat::expect_equal(
app_driver$get_active_module_input("anl_toxgrade_var-dataset_ADLB_singleextract-select"),
"ATOXGR"
)
testthat::expect_equal(
app_driver$get_active_module_input("base_toxgrade_var-dataset_ADLB_singleextract-select"),
"BTOXGR"
)
testthat::expect_equal(
app_driver$get_active_module_input("worst_flag_indicator"),
"Y"
)
testthat::expect_false(app_driver$get_active_module_input("add_total"))
testthat::expect_true(app_driver$get_active_module_input("drop_arm_levels"))
testthat::expect_false(app_driver$get_active_module_input("code_missing_baseline"))
app_driver$stop()
}
)

testthat::test_that(
"e2e - tm_t_shift_by_grade: Selecting arm_var-variable changes the table and does not throw validation errors.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
table_before <- app_driver$get_active_module_tws_output("table")
app_driver$set_active_module_input("arm_var-dataset_ADSL_singleextract-select", "ARMCD")
testthat::expect_false(identical(table_before, app_driver$get_active_module_tws_output("table")))
app_driver$expect_no_validation_error()
app_driver$stop()
}
)

testthat::test_that("e2e - tm_t_shift_by_grade: Deselection of arm_var-variable throws validation error.", {
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
app_driver$set_active_module_input("arm_var-dataset_ADSL_singleextract-select", NULL)
testthat::expect_identical(app_driver$get_active_module_tws_output("table"), data.frame())
app_driver$expect_validation_error()
testthat::expect_equal(
app_driver$active_module_element_text("arm_var-dataset_ADSL_singleextract-select_input .shiny-validation-message"),
"A treatment variable is required"
)
app_driver$stop()
})

testthat::test_that(
"e2e - tm_t_shift_by_grade: Selecting paramcd-level changes the table and does not throw validation errors.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
table_before <- app_driver$get_active_module_tws_output("table")
app_driver$set_active_module_input("paramcd-dataset_ADLB_singleextract-filter1-vals", "CRP")
testthat::expect_false(identical(table_before, app_driver$get_active_module_tws_output("table")))
app_driver$expect_no_validation_error()
app_driver$stop()
}
)

testthat::test_that("e2e - tm_t_shift_by_grade: Deselection of paramcd-level throws validation error.", {
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
app_driver$set_active_module_input("paramcd-dataset_ADLB_singleextract-filter1-vals", NULL)
testthat::expect_identical(app_driver$get_active_module_tws_output("table"), data.frame())
app_driver$expect_validation_error()
testthat::expect_equal(
app_driver$active_module_element_text(
"paramcd-dataset_ADLB_singleextract-filter1-vals_input .shiny-validation-message"
),
"A laboratory parameter is required"
)
app_driver$stop()
})

testthat::test_that(
"e2e - tm_t_shift_by_grade: Selecting worst_flag-variable changes the table and does not throw validation errors.",
{
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
table_before <- app_driver$get_active_module_tws_output("table")
app_driver$set_active_module_input("worst_flag_var-dataset_ADLB_singleextract-select", "WGRLOFL")
testthat::expect_false(identical(table_before, app_driver$get_active_module_tws_output("table")))
app_driver$expect_no_validation_error()
app_driver$stop()
}
)

testthat::test_that("e2e - tm_t_shift_by_grade: Deselection of worst_flag-variable throws validation error.", {
skip_if_too_deep(5)
app_driver <- app_driver_tm_t_shift_by_grade()
app_driver$set_active_module_input("worst_flag_var-dataset_ADLB_singleextract-select", NULL)
testthat::expect_identical(app_driver$get_active_module_tws_output("table"), data.frame())
app_driver$expect_validation_error()
testthat::expect_equal(
app_driver$active_module_element_text(
"worst_flag_var-dataset_ADLB_singleextract-select_input .shiny-validation-message"
),
"A worst treatment flag is required"
)
app_driver$stop()
})

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