fix: update renv dependencies

insightsengineering · Sep 26, 2023 · 11509a9 · 11509a9
1 parent 156fee0
commit 11509a9
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Showing 11 changed files with 1,408 additions and 503 deletions.
diff --git a/RNA-seq/renv.lock b/RNA-seq/renv.lock
diff --git a/RNA-seq/renv/activate.R b/RNA-seq/renv/activate.R
@@ -2,7 +2,7 @@
 local({
 
   # the requested version of renv
-  version <- "1.0.2"
+  version <- "1.0.3"
   attr(version, "sha") <- NULL
 
   # the project directory
@@ -1034,19 +1034,6 @@ local({
 
   }
 
-
-  renv_bootstrap_in_rstudio <- function() {
-    commandArgs()[[1]] == "RStudio"
-  }
-
-  # Used to work around buglet in RStudio if hook uses readline
-  renv_bootstrap_flush_console <- function() {
-    tryCatch({
-      tools <- as.environment("tools:rstudio")
-      tools$.rs.api.sendToConsole("", echo = FALSE, focus = FALSE)
-    }, error = function(cnd) {})
-  }
-
   renv_json_read <- function(file = NULL, text = NULL) {
 
     jlerr <- NULL
@@ -1185,16 +1172,8 @@ local({
   # construct full libpath
   libpath <- file.path(root, prefix)
 
-  if (renv_bootstrap_in_rstudio()) {
-    # RStudio only updates console once .Rprofile is finished, so
-    # instead run code on sessionInit
-    setHook("rstudio.sessionInit", function(...) {
-      renv_bootstrap_exec(project, libpath, version)
-      renv_bootstrap_flush_console()
-    })
-  } else {
-    renv_bootstrap_exec(project, libpath, version)
-  }
+  # run bootstrap code
+  renv_bootstrap_exec(project, libpath, version)
 
   invisible()
 

diff --git a/_internal/quarto/assets/www/logo-nest.png b/_internal/quarto/assets/www/logo-nest.png
diff --git a/_internal/quarto/assets/www/teal.gallery.png b/_internal/quarto/assets/www/teal.gallery.png