Deploy Apps 🚀 #352
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| --- | |
| name: Deploy Apps 🚀 | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "*" | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '12 3 * * *' | |
| concurrency: | |
| group: publish-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| SHINYAPPSIO_ACCOUNT: genentech | |
| jobs: | |
| deploy: | |
| defaults: | |
| run: | |
| shell: bash | |
| name: Publish 🗞 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/insightsengineering/rstudio_4.3.1_bioc_3.17:latest | |
| if: > | |
| !contains(github.event.commits[0].message, '[skip deploy]') | |
| steps: | |
| - name: Checkout repo 🛎 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ${{ github.event.repository.name }} | |
| - name: Overwrite the global Rprofile ✍️ | |
| run: | | |
| cat > /usr/local/lib/R/etc/Rprofile.site <<RPROFILE | |
| options( | |
| repos = c( | |
| Pharmaverse = "https://pharmaverse.r-universe.dev", | |
| CRAN = "https://cloud.r-project.org", | |
| BioC = BiocManager::repositories() | |
| ), | |
| download.file.method = 'libcurl', | |
| HTTPUserAgent = sprintf( | |
| "R/%s R (%s)", | |
| getRversion(), | |
| paste(getRversion(), R.version["platform"], R.version["arch"], R.version["os"]) | |
| ) | |
| ) | |
| RPROFILE | |
| - name: Deploy apps 🖨 ${{ github.event.repository.name }} 🎨 | |
| run: | | |
| Sys.setenv(GITHUB_PAT="${{ secrets.GITHUB_TOKEN }}") | |
| devtools::install_local( | |
| ".", | |
| upgrade = "never", | |
| dependencies = TRUE | |
| ) | |
| teal.gallery::deploy_all_apps( | |
| api_key = "${{ secrets.SHINYAPPSIO_TOKEN }}", | |
| api_secret = "${{ secrets.SHINYAPPSIO_SECRET }}", | |
| title_prefix = "NEST", | |
| title_suffix = "${{ github.ref_name }}", | |
| server = "https://${{ env.SHINYAPPSIO_ACCOUNT }}.shinyapps.io", | |
| create_manifest = TRUE | |
| ) | |
| working-directory: ${{ github.event.repository.name }} | |
| shell: Rscript {0} |