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datanames in vignettes #357

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22 changes: 20 additions & 2 deletions R/teal_data-constructor.R
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
#' @description
#' `r lifecycle::badge("stable")`
#'
#' Universal function to pass data to teal application.
#' Initializes a data for `teal` application.
#'
#' @param ... any number of objects (presumably data objects) provided as `name = value` pairs.
#'
Expand All @@ -14,10 +14,28 @@
#' @param code (`character`, `language`) optional code to reproduce the datasets provided in `...`.
#' Note this code is not executed and the `teal_data` may not be reproducible
#'
#' Use [verify()] to verify code reproducibility .
#' Use [verify()] to verify code reproducibility.
#'
#' @details
#'
#' A `teal_data` is meant to be used for reproducibility purposes. The class inherits from
#' [`teal.data::qenv`] and we encourage to get familiar with \CRANpkg{teal.code} first.
#' `teal_data` has following characteristics:
#'
#' - It inherits from the environment and methods such as [`$`], [get()], [ls()], [as.list()],
#' [parent.env()] work out of the box.
#' - `teal_data` is a locked environment, and data modification is only possible through the
#' [teal.code::eval_code()] and [within.qenv()] functions.
#' - It stores metadata about the code used to create the data (see [get_code()]).
#' - It supports slicing (see [`teal.code::subset-qenv`])
#' - Is immutable which means that each code evaluation does not modify the original `teal_data`
#' environment directly.
#' - It maintains information about relationships between datasets (see [join_keys()]).
#'
#' @return A `teal_data` object.
#'
#' @seealso [`teal.code::eval_code`], [get_code()], [join_keys()], [names.teal_data()]
#'
#' @export
#'
#' @examples
Expand Down
3 changes: 2 additions & 1 deletion R/teal_data-show.R
Original file line number Diff line number Diff line change
Expand Up @@ -16,5 +16,6 @@ setMethod("show", signature = "teal_data", function(object) {
} else {
cat("\u2716", "unverified teal_data object\n")
}
rlang::env_print(teal.code::get_env(object))
methods::callNextMethod(object)
invisible(object)
})
2 changes: 1 addition & 1 deletion man/cdisc_data.Rd

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2 changes: 1 addition & 1 deletion man/teal_data-class.Rd

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23 changes: 21 additions & 2 deletions man/teal_data.Rd

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29 changes: 15 additions & 14 deletions vignettes/teal-data.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -11,12 +11,21 @@ vignette: >
# Introduction

The `teal.data` package specifies the data format used in `teal` applications.
The `teal_data` class inherits from [`qenv`](https://insightsengineering.github.io/teal.code/latest-tag/articles/qenv.html) and is meant to be used for reproducibility purposes.


A `teal_data` is meant to be used for reproducibility purposes. The class inherits from [`qenv`](https://insightsengineering.github.io/teal.code/latest-tag/articles/qenv.html) and we encourage to get familiar with [`teal.code`](https://insightsengineering.github.io/teal.code/latest-tag/) first. `teal_data` has following characteristics:

- It inherits from the environment and methods such as `$`, `get()`, `ls()`, `as.list()` work out of the box.
- `teal_data` is a locked environment, and data modification is only possible through the `teal.code::eval_code()` and `within.qenv()` functions.
- It stores metadata about the code used to create the data (see [reproducibility](#reproducibility)).
- It supports slicing by `[`.
- It is immutable which means that each code evaluation does not modify the original `teal_data` environment directly.
- It maintains information about relationships between datasets (see [Join Keys](#relational-data-models)).

## Quick Start

To create an object of class `teal_data`, use the `teal_data` function.
`teal_data` has a number of methods to manage relevant information in private class slots.
`teal_data` has a number of methods to interact with the object.

```{r, results = 'hide', message = FALSE}
library(teal.data)
Expand Down Expand Up @@ -46,23 +55,14 @@ get_code(my_data)

# get code just for specific object
get_code(my_data, names = "data2")

# get datanames
names(my_data)

# print
print(my_data)
```


## `teal_data` characteristics

A `teal_data` object keeps the following information:

- `env` - an environment containing data.
- `code` - a string containing code to reproduce `env` (details in [reproducibility](teal-data-reproducibility.html)).
- `names` - a character vector listing objects of interest to `teal` modules (details in [this `teal` vignette](https://insightsengineering.github.io/teal/latest-tag/articles/including-data-in-teal-applications.html)).
- `join_keys` - a `join_keys` object defining relationships between datasets (details in [Join Keys](join-keys.html)).

### Reproducibility

The primary function of `teal_data` is to provide reproducibility of data.
Expand Down Expand Up @@ -104,8 +104,8 @@ join_keys(my_data["child"])

### Hidden objects

An object is hidden in `teal_data` if its name starts with a dot (`.`).
This can be used to pass auxiliary objects / function in the `teal_data` instance, without being visible in the `teal` summary and filter panel.
An object is hidden in `teal_data` if its name starts with a dot (`.`). This can be used to pass auxiliary objects in
the `teal_data` instance, without being visible in the `teal` summary and filter panel.

```{r}
my_data <- teal_data()
Expand All @@ -114,5 +114,6 @@ my_data <- within(my_data, {
.data2 <- data.frame(id = 1:20, data_id = c(1:10, 1:10), y = 21:30)
})

ls(my_data)
names(my_data)
```
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