add cdisc information into JoinKeys (#132)

closes #120 - removed `CDISCTealData` and replaced its functionality with `TealData`. - removed `join_keys` mentions in `TealDataset` and `TealDatasetConnector`. - updated wrappers `cdisc_data` and `teal_data` to set up join_keys by calling `JoinKeys` functionalities. They check if `join_keys` are passed otherwise they create them according to primary keys. - deprecated `cdisc_data_file` - Added tests to `test-joinKeys.R` - Updated and added tests of `test-TealData`, `test-TealDataAbstract`, `test-cdisc_data` and `test-teal_data`. - updated `teal.slice::init_filtered_data` to remove `CDISCTealData` S3 method and to account for `cdisc` status in the `TealData` S3 method: insightsengineering/teal.slice#169 --------- Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com> Co-authored-by: Arkadiusz Beer <[email protected]> Co-authored-by: Andrew Bates <[email protected]> Co-authored-by: Dawid Kałędkowski <[email protected]>
insightsengineering · Feb 8, 2023 · 36090d2 · 36090d2
1 parent cd2b284
commit 36090d2
Show file tree

Hide file tree

Showing 34 changed files with 2,073 additions and 2,655 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -7,6 +7,10 @@
 * Improved error message in `get_cdisc_keys`. 
 * Fixed help files for `TealDataset` and `MAETealDataset`.
 * Added backstop for missing `reticulate` package in _teal.data with Python_ vignette.
+* Removed `CDISCTealData` class and updated `TealData` to account for the removed functionality.
+* Added datasets parents information to `JoinKeys` class.
+* Updated `cdisc_data` and `teal_data` wrappers to handle join_keys creation and updating instead of `CDISCTealData` and `TealData`.
+* Removed join_keys methods from `TealDataset`, `TealDatasetConnector`.
 
 # teal.data 0.1.2
 

diff --git a/R/CDISCTealData.R b/R/CDISCTealData.R