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Update table snapshots #80

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merged 2 commits into from
Dec 12, 2023
Merged

Update table snapshots #80

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fae2b7f
Update snapshots for tables with referential footnotes
edelarua Dec 6, 2023
f45c034
Update dep versions
edelarua Dec 8, 2023
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12 changes: 6 additions & 6 deletions DESCRIPTION
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Expand Up @@ -21,14 +21,14 @@ License: Apache License 2.0 | file LICENSE
URL: https://github.com/insightsengineering/scda.test/
BugReports: https://github.com/insightsengineering/scda.test/issues
Depends:
formatters (>= 0.5.4.9002),
formatters (>= 0.5.5),
R (>= 4.2),
rlistings (>= 0.2.6.9005),
rtables (>= 0.6.5.9004),
tern (>= 0.9.2.9001)
rlistings (>= 0.2.7),
rtables (>= 0.6.6),
tern (>= 0.9.3)
Imports:
scda (>= 0.1.6.9012),
scda.2022 (>= 0.1.5.9002)
scda (>= 0.1.6.9013),
scda.2022 (>= 0.1.5.9003)
Suggests:
broom,
checkmate,
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15 changes: 6 additions & 9 deletions tests/testthat/_snaps/table_lbt11.md
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Expand Up @@ -12,16 +12,15 @@
Median NA NA 728.0
95% CI NA (724.0, NA) NA
25% and 75%-ile 618.0, NA 724.0, NA 728.0, 728.0
Range 1.0 to 731.0 {1} 1.0 to 728.0 {2} 1.0 to 728.0 {3}
Range 1.0 to 731.0 {1} 1.0 to 728.0 {1} 1.0 to 728.0 {2}
Unstratified Analysis
p-value (log-rank) 0.0295 0.1687
Hazard Ratio 0.43 0.58
95% CI (0.19, 0.94) (0.26, 1.27)
———————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observations: range minimum & maximum
{2} - Censored observations: range minimum & maximum
{3} - Censored observation: range minimum
{2} - Censored observation: range minimum
———————————————————————————————————————————————————————————————————————————————————————


Expand All @@ -39,12 +38,11 @@
Median NA NA 728.0
95% CI NA (724.0, NA) NA
25% and 75%-ile 618.0, NA 724.0, NA 728.0, 728.0
Range 1.0 to 731.0 {1} 1.0 to 728.0 {2} 1.0 to 728.0 {3}
Range 1.0 to 731.0 {1} 1.0 to 728.0 {1} 1.0 to 728.0 {2}
———————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observations: range minimum & maximum
{2} - Censored observations: range minimum & maximum
{3} - Censored observation: range minimum
{2} - Censored observation: range minimum
———————————————————————————————————————————————————————————————————————————————————————


Expand All @@ -62,7 +60,7 @@
Median NA NA 728.0
95% CI NA (724.0, NA) NA
25% and 75%-ile 618.0, NA 724.0, NA 728.0, 728.0
Range 1.0 to 731.0 {1} 1.0 to 728.0 {2} 1.0 to 728.0 {3}
Range 1.0 to 731.0 {1} 1.0 to 728.0 {1} 1.0 to 728.0 {2}
Unstratified Analysis
p-value (log-rank) 0.0295 0.1687
Hazard Ratio 0.43 0.58
Expand All @@ -74,8 +72,7 @@
———————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observations: range minimum & maximum
{2} - Censored observations: range minimum & maximum
{3} - Censored observation: range minimum
{2} - Censored observation: range minimum
———————————————————————————————————————————————————————————————————————————————————————


12 changes: 3 additions & 9 deletions tests/testthat/_snaps/table_lbt11_bl.md
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Expand Up @@ -12,16 +12,14 @@
Median NA NA 721.0
95% CI NA (681.0, NA) (691.0, NA)
25% and 75%-ile 608.0, NA 558.0, NA 644.0, NA
Range 1.0 to 728.0 {1} 1.0 to 726.0 {2} 1.0 to 724.0 {3}
Range 1.0 to 728.0 {1} 1.0 to 726.0 {1} 1.0 to 724.0 {1}
Unstratified Analysis
p-value (log-rank) 0.5013 0.6413
Hazard Ratio 1.27 0.84
95% CI (0.63, 2.56) (0.40, 1.75)
———————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observations: range minimum & maximum
{2} - Censored observations: range minimum & maximum
{3} - Censored observations: range minimum & maximum
———————————————————————————————————————————————————————————————————————————————————————


Expand All @@ -39,12 +37,10 @@
Median NA NA 721.0
95% CI NA (681.0, NA) (691.0, NA)
25% and 75%-ile 608.0, NA 558.0, NA 644.0, NA
Range 1.0 to 728.0 {1} 1.0 to 726.0 {2} 1.0 to 724.0 {3}
Range 1.0 to 728.0 {1} 1.0 to 726.0 {1} 1.0 to 724.0 {1}
———————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observations: range minimum & maximum
{2} - Censored observations: range minimum & maximum
{3} - Censored observations: range minimum & maximum
———————————————————————————————————————————————————————————————————————————————————————


Expand All @@ -62,7 +58,7 @@
Median NA NA 721.0
95% CI NA (681.0, NA) (691.0, NA)
25% and 75%-ile 608.0, NA 558.0, NA 644.0, NA
Range 1.0 to 728.0 {1} 1.0 to 726.0 {2} 1.0 to 724.0 {3}
Range 1.0 to 728.0 {1} 1.0 to 726.0 {1} 1.0 to 724.0 {1}
Unstratified Analysis
p-value (log-rank) 0.5013 0.6413
Hazard Ratio 1.27 0.84
Expand All @@ -74,8 +70,6 @@
———————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observations: range minimum & maximum
{2} - Censored observations: range minimum & maximum
{3} - Censored observations: range minimum & maximum
———————————————————————————————————————————————————————————————————————————————————————


28 changes: 7 additions & 21 deletions tests/testthat/_snaps/table_ttet01.md
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Expand Up @@ -14,7 +14,7 @@
Median NA NA 9.4
95% CI (9.3, NA) (9.4, NA) (7.6, NA)
25% and 75%-ile 5.6, NA 5.6, NA 5.0, NA
Range 0.5 to 16.4 {1} 0.9 to 16.3 {2} 0.5 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.9 to 16.3 {1} 0.5 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1541
Hazard Ratio 1.00 1.29
Expand All @@ -36,8 +36,6 @@
—————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
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Expand All @@ -57,7 +55,7 @@
Median NA 9.4 NA
95% CI (9.3, NA) (7.6, NA) (9.4, NA)
25% and 75%-ile 5.6, NA 5.0, NA 5.6, NA
Range 0.5 to 16.4 {1} 0.5 to 16.3 {2} 0.9 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.5 to 16.3 {1} 0.9 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1480
Hazard Ratio 1.00 1.29
Expand All @@ -79,8 +77,6 @@
—————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
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Expand All @@ -98,7 +94,7 @@
Median NA NA 9.4
95% CI (9.3, NA) (9.4, NA) (7.6, NA)
25% and 75%-ile 5.6, NA 5.6, NA 5.0, NA
Range 0.5 to 16.4 {1} 0.9 to 16.3 {2} 0.5 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.9 to 16.3 {1} 0.5 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1541
Hazard Ratio 1.00 1.29
Expand All @@ -110,8 +106,6 @@
——————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
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Expand All @@ -131,7 +125,7 @@
Median NA NA 9.4
90% CI (9.6, NA) (9.6, NA) (7.7, NA)
25% and 75%-ile 5.6, NA 5.6, NA 5.0, NA
Range 0.5 to 16.4 {1} 0.9 to 16.3 {2} 0.5 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.9 to 16.3 {1} 0.5 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1541
Hazard Ratio 1.00 1.29
Expand All @@ -146,8 +140,6 @@
———————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
———————————————————————————————————————————————————————————————————————————————————


Expand All @@ -167,7 +159,7 @@
Median NA NA 9.4
95% CI (9.3, NA) (9.4, NA) (7.6, NA)
25% and 75%-ile 5.6, NA 5.6, NA 5.0, NA
Range 0.5 to 16.4 {1} 0.9 to 16.3 {2} 0.5 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.9 to 16.3 {1} 0.5 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1541
Hazard Ratio 1.00 1.29
Expand All @@ -186,8 +178,6 @@
—————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
—————————————————————————————————————————————————————————————————————————————————————


Expand All @@ -207,7 +197,7 @@
Median NA NA 9.4
95% CI (9.3, NA) (9.4, NA) (7.6, NA)
25% and 75%-ile 5.6, NA 5.6, NA 5.0, NA
Range 0.5 to 16.4 {1} 0.9 to 16.3 {2} 0.5 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.9 to 16.3 {1} 0.5 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1541
Hazard Ratio 1.00 1.29
Expand All @@ -222,8 +212,6 @@
—————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
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Expand All @@ -243,7 +231,7 @@
Median NA NA 9.4
95% CI (9.3, NA) (9.4, NA) (7.6, NA)
25% and 75%-ile 5.6, NA 5.6, NA 5.0, NA
Range 0.5 to 16.4 {1} 0.9 to 16.3 {2} 0.5 to 16.3 {3}
Range 0.5 to 16.4 {1} 0.9 to 16.3 {1} 0.5 to 16.3 {1}
Unstratified Analysis
p-value (log-rank) 0.9998 0.1541
p-value (wald) 0.9998 0.1552
Expand All @@ -260,8 +248,6 @@
—————————————————————————————————————————————————————————————————————————————————————

{1} - Censored observation: range maximum
{2} - Censored observation: range maximum
{3} - Censored observation: range maximum
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4 changes: 2 additions & 2 deletions tests/testthat/test-table_aet02.R
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Expand Up @@ -68,10 +68,10 @@ testthat::test_that("AET02 variant 1 is produced correctly", {
# Testing pagination with not repeated Total number of patients
pag_result <- paginate_table(result, cpp = 75) # std is 70 which fails
testthat::expect_identical(
to_string_matrix(pag_result[[1]])[3, 1],
to_string_matrix(pag_result[[1]], with_spaces = FALSE)[3, 1],
"Total number of patients with at least one adverse event"
)
testthat::expect_identical(to_string_matrix(pag_result[[2]])[5, 1], "cl A.1")
testthat::expect_identical(to_string_matrix(pag_result[[2]], with_spaces = FALSE)[5, 1], "cl A.1")
})

testthat::test_that("AET02 variant 2 is produced correctly", {
Expand Down
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