Fix honoring skip phrases

.github/workflows/audit.yaml

@@ -36,8 +36,37 @@ jobs:
       !contains(github.event.commits[0].message, '[skip audit]')
         && github.event.pull_request.draft == false
     steps:
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          fetch-depth: 1
+
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          fetch-depth: 1
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip audit]"
 
       - name: Normalize inputs 🛠️
         id: normalizer

.github/workflows/bioccheck.yaml

@@ -107,6 +107,20 @@ jobs:
           ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           path: ${{ github.event.repository.name }}
 
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        working-directory: ${{ github.event.repository.name }}
+        env:
+          SKIP_INSTRUCTION: "[skip bioccheck]"
+
       - name: Restore SD cache 💰
         uses: actions/cache@v4
         with:

.github/workflows/build-check-install.yaml

@@ -218,6 +218,40 @@ jobs:
         id: branch-name
         uses: tj-actions/branch-names@v7
 
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          path: ${{ github.event.repository.name }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          # When fetch-depth is set to 1 (default), and if additional commits are added
+          # to the branch between this step and the 'Set TESTING_DEPTH' step, git might fail
+          # referencing ${{ github.event.after }} commit
+          # because it's not the latest commit fetched by this step.
+          fetch-depth: 0
+
+      - name: Checkout repo 🛎
+        uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          path: ${{ github.event.repository.name }}
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        working-directory: ${{ github.event.repository.name }}
+        env:
+          SKIP_INSTRUCTION: "[skip r-cmd]"
+
       - name: Checkout gh-pages 🛎
         if: >-
           inputs.publish-unit-test-report-gh-pages == true
@@ -301,26 +335,6 @@ jobs:
         run: npm i -g xunit-viewer
         shell: bash
 
-      - name: Checkout repo (PR) 🛎
-        uses: actions/checkout@v4
-        if: github.event_name == 'pull_request'
-        with:
-          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
-          path: ${{ github.event.repository.name }}
-          repository: ${{ github.event.pull_request.head.repo.full_name }}
-          # When fetch-depth is set to 1 (default), and if additional commits are added
-          # to the branch between this step and the 'Set TESTING_DEPTH' step, git might fail
-          # referencing ${{ github.event.after }} commit
-          # because it's not the latest commit fetched by this step.
-          fetch-depth: 0
-
-      - name: Checkout repo 🛎
-        uses: actions/checkout@v4
-        if: github.event_name != 'pull_request'
-        with:
-          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
-          path: ${{ github.event.repository.name }}
-
       - name: Restore SD cache 💰
         if: inputs.install-deps-from-package-repositories == ''
         uses: actions/cache@v4
@@ -843,6 +857,7 @@ jobs:
       startsWith(github.ref, 'refs/tags/v')
         && (!contains(github.event.commits[0].message, '[skip r-cmd]'))
         && github.event.pull_request.draft == false
+
     steps:
       - name: Checkout repo 🛎
         uses: actions/checkout@v4

.github/workflows/gitleaks.yaml

@@ -38,9 +38,37 @@ jobs:
     if: >
       !contains(github.event.commits[0].message, '[skip gitleaks]')
         && github.event.pull_request.draft == false
+
     steps:
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip gitleaks]"
 
       - name: Download and install gitleaks 💧
         run: |
@@ -68,12 +96,40 @@ jobs:
       !contains(github.event.commits[0].message, '[skip pii-check]')
         && github.event.pull_request.draft == false
         && inputs.check-for-pii == true
+
     steps:
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+          fetch-depth: 0
+
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
         with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
           fetch-depth: 0
 
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip pii-check]"
+
       - name: Run Presidio to check for PII ☔
         uses: insightsengineering/presidio-action@v1
         with:

.github/workflows/grammar.yaml

@@ -39,8 +39,35 @@ jobs:
         && github.event.pull_request.draft == false
 
     steps:
-      - name: Checkout Code 🛎
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+
+      - name: Checkout repo 🛎
         uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip grammar]"
 
       - name: Restore npm cache 💰
         uses: actions/cache@v4

.github/workflows/licenses.yaml

@@ -32,9 +32,37 @@ jobs:
     if: >
       !contains(github.event.commits[0].message, '[skip licenses]')
         && github.event.pull_request.draft == false
+
     steps:
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip licenses]"
 
       - name: Generate license report 📜
         uses: insightsengineering/r-license-report@v1

.github/workflows/links.yaml

@@ -34,8 +34,35 @@ jobs:
       !contains(github.event.commits[0].message, '[skip links]')
         && github.event.pull_request.draft == false
     steps:
+      - name: Get branch names 🌿
+        id: branch-name
+        uses: tj-actions/branch-names@v7
+
+      - name: Checkout repo (PR) 🛎
+        uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
+
       - name: Checkout repo 🛎
         uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          ref: ${{ steps.branch-name.outputs.head_ref_branch }}
+
+      - name: Check commit message 💬
+        run: |
+          git config --global --add safe.directory $(pwd)
+          export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
+          echo "head_commit_message = $head_commit_message"
+          if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
+            echo "Skip instruction detected - cancelling the workflow."
+            exit 1
+          fi
+        shell: bash
+        env:
+          SKIP_INSTRUCTION: "[skip links]"
 
       - name: Check URLs in docs 🔬
         uses: lycheeverse/[email protected]