Add upgrade-remotes input #964
Workflow file for this run
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| --- | |
| name: R Package Validation report 📃 | |
| on: | |
| push: | |
| tags: | |
| - "v*" | |
| branches: | |
| - main | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| - ready_for_review | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| workflow_call: | |
| inputs: | |
| install-system-dependencies: | |
| description: Check for and install system dependencies | |
| required: false | |
| default: false | |
| type: boolean | |
| enable-staged-dependencies-check: | |
| description: Enable staged dependencies YAML check | |
| required: false | |
| default: false | |
| type: boolean | |
| sd-direction: | |
| description: The direction to use to install staged dependencies. Choose between 'upstream', 'downstream' and 'all' | |
| required: false | |
| type: string | |
| default: upstream | |
| package-subdirectory: | |
| description: Subdirectory in the repository, where the R package is located. | |
| required: false | |
| type: string | |
| default: "." | |
| secrets: | |
| REPO_GITHUB_TOKEN: | |
| description: | | |
| Github token with read access to repositories, required for staged.dependencies installation | |
| required: false | |
| concurrency: | |
| group: validation-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| validation: | |
| name: Create report 📃 | |
| runs-on: ubuntu-latest | |
| if: > | |
| !contains(github.event.commits[0].message, '[skip validation]') | |
| && github.event.pull_request.draft == false | |
| container: | |
| image: ghcr.io/insightsengineering/rstudio_4.3.1_bioc_3.17:latest | |
| permissions: | |
| contents: write | |
| packages: write | |
| deployments: write | |
| steps: | |
| - name: Setup token 🔑 | |
| id: github-token | |
| run: | | |
| if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then | |
| echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN." | |
| echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT | |
| else | |
| echo "Using REPO_GITHUB_TOKEN." | |
| echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT | |
| fi | |
| shell: bash | |
| - name: Checkout repo 🛎 | |
| uses: actions/checkout@v3 | |
| - name: Normalize variables 📏 | |
| run: | | |
| package_subdirectory_input="${{ inputs.package-subdirectory }}" | |
| echo "package_subdirectory=${package_subdirectory_input:-.}" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Restore SD cache 💰 | |
| uses: actions/cache@v3 | |
| with: | |
| key: sd-${{ runner.os }}-${{ github.event.repository.name }} | |
| path: ~/.staged.dependencies | |
| - name: Run Staged dependencies 🎦 | |
| uses: insightsengineering/staged-dependencies-action@v1 | |
| env: | |
| GITHUB_PAT: ${{ steps.github-token.outputs.token }} | |
| with: | |
| path: ${{ env.package_subdirectory }} | |
| enable-check: ${{ inputs.enable-staged-dependencies-check }} | |
| run-system-dependencies: ${{ inputs.install-system-dependencies }} | |
| direction: ${{ inputs.sd-direction }} | |
| - name: Build report 🏗 | |
| uses: insightsengineering/thevalidatoR@v1 | |
| env: | |
| GITHUB_PAT: ${{ steps.github-token.outputs.token }} | |
| with: | |
| report_output_prefix: validation_report | |
| report_pkg_dir: ${{ env.package_subdirectory }} | |
| - name: Upload report for review ⬆ | |
| if: github.ref != 'refs/heads/main' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: validation_report.pdf | |
| path: validation_report.pdf | |
| upload-release-assets: | |
| name: Upload report to release 🔼 | |
| needs: validation | |
| runs-on: ubuntu-latest | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| steps: | |
| - name: Checkout repo 🛎 | |
| uses: actions/checkout@v3 | |
| - name: Download artifact ⏬ | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: validation_report.pdf | |
| - name: Check if release exists | |
| id: check-if-release-exists | |
| uses: insightsengineering/release-existence-action@v1 | |
| - name: Upload report to release 🔼 | |
| if: >- | |
| steps.check-if-release-exists.outputs.release-exists == 'true' | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| file: ./validation_report.pdf | |
| asset_name: validation-report.pdf | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| overwrite: true |