add explicit genark support in genome config (to support webapp)

igvteam · Aug 20, 2024 · 6b31603 · 6b31603
1 parent 20f48e0
commit 6b31603
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/js/browser.js b/js/browser.js
@@ -60,6 +60,7 @@ import igvCss from "./embedCss.js"
 import {sampleInfoTileWidth, sampleInfoTileXShim} from "./sample/sampleInfoConstants.js"
 import QTLSelections from "./qtl/qtlSelections.js"
 import {inferFileFormat} from "./util/fileFormatUtils.js"
+import {convertToHubURL} from "./ucsc/ucscUtils.js"
 
 
 // css - $igv-scrollbar-outer-width: 14px;
@@ -824,6 +825,10 @@ class Browser {
      */
     async loadGenome(idOrConfig) {
 
+        if(idOrConfig.genarkAccession) {
+            idOrConfig.url = convertToHubURL(idOrConfig.genarkAccession)
+        }
+
         // Translate the generic "url" field, used by clients such as igv-webapp
         if (idOrConfig.url) {
             if (StringUtils.isString(idOrConfig.url) && idOrConfig.url.endsWith("/hub.txt")) {