seagliderOG1

This repository is intended to convert Seaglider basestation files (pSSSDDDD*.nc) into OG1 format.

Code is based on code from votoutils.

Organisation

Scripts within the seagliderOG1 package are divided by functionality:

• readers.py reads basestation files (*.nc) from a server or local directory
• writers.py writes OG1 *.nc files, default directory data/
• plotters.py contains some basic plotting and viewing functions
• convertOG1.py converts the basestation files to OG1 format
• vocabularies.py contains some of the vocabulary translation (might be better as a YAML file)
• seaglider_registr.txt has checksums for data files
• tools.py functions the user may want to use
• utilities.py functions the user probably will never need to call (only used in other functions)

Directory

File directory structure is as follows.

seagliderOG1/

• .github/
• config/
  • OG1_author.yaml
  • OG1_global_attrs.yaml
  • OG1_global_attrs.yaml
  • OG1_sensor_attrs.yaml
  • OG1_var_names.yaml
  • OG1_vocab_attrs.yaml
  • mission_yaml.yaml
• data/
  • test.nc
• notebooks/
  • dev_notebooks/
    • dev-troubleshoot.ipynb
    • download_and_register.ipynb
  • demo.ipynb
• seagliderOG1/
  • convertOG1.py
  • plotters.py
  • readers.py
  • seaglider_registry.txt
  • tools.py
  • utilities.py
  • vocabularies.py
  • writers.py
• tests/
  • test_readers.py
• .gitignore
• LICENSE
• README.md
• requirements-dev.txt
• requirements.txt

Status

Still early days, but collaborations welcome!