fixed bugs with templates

ifbanks · Sep 18, 2020 · be7e69f · be7e69f
1 parent dcbee03
commit be7e69f
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diff --git a/__pycache__/synapses.cpython-36.pyc b/__pycache__/synapses.cpython-36.pyc
diff --git a/batch_comet_build.sh b/batch_comet_build.sh
@@ -0,0 +1,27 @@
+#!/bin/bash
+#SBATCH --partition compute
+#SBATCH --nodes=1
+#SBATCH --ntasks-per-node=1
+#SBATCH -A TG-DBS180005
+#SBATCH --job-name=full_build
+#SBATCH --output=full_build.out
+#SBATCH --time 0-00:30
+
+
+module purge
+#module load python
+module load intel
+module load openmpi_ib
+export PYTHONPATH=$HOME/nrn/lib/python:$PYTHONPATH
+export LD_LIBRARY_PATH=$HOME/nrn/x86_64/lib:$LD_LIBRARY_PATH
+export PATH=$HOME/nrn/x86_64/bin:$PATH
+
+rm -rf network/*
+
+echo "Building model at $(date)"
+
+python build_network.py
+
+echo "Done building model at $(date)"
+
+
diff --git a/batch_comet_run.sh b/batch_comet_run.sh
@@ -0,0 +1,28 @@
+#!/bin/bash
+
+#SBATCH --partition compute
+#SBATCH --nodes=1
+#SBATCH --ntasks-per-node=1
+#SBATCH -A TG-DBS180005
+#SBATCH --job-name=full_run
+#SBATCH --output=full_run.out
+#SBATCH --time 0-00:30
+
+module purge
+#module load python
+module load intel
+module load openmpi_ib
+export LD_LIBRARY_PATH=$HOME/nrn/x86_64/lib:$LD_LIBRARY_PATH
+export PYTHONPATH=$HOME/nrn/lib/python:$PYTHONPATH
+export PATH=$HOME/nrn/x86_64/bin:$PATH
+
+rm -rf output
+
+
+echo "Running model at $(date)"
+
+#mpirun nrniv -mpi -quiet -python3 run_network.py simulation_config.json
+ibrun nrniv -mpi -python run_save_network.py
+#python run_network.py simulation_configECP.json
+
+echo "Done running model at $(date)"