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add argo functionality to QUEST#427

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JessicaS11 merged 140 commits intodevelopmenticesat2py/icepyx:developmentfrom argoicesat2py/icepyx:argoCopy head branch name to clipboardDec 7, 2023

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Commits on Feb 23, 2022

• Adding argo search and download script

  kelseybisson

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• Create get_argo.py

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  kelseybisson

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Commits on Feb 28, 2022

• begin implementing argo dataset

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Commits on Mar 8, 2022

• 1st draft implementing argo dataset

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Commits on Apr 26, 2022

• implement search_data for physical argo

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Commits on Jun 13, 2022

• doctests and general cleanup for physical argo query

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Commits on Jun 23, 2022

• beginning of BGC Argo download

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Commits on Jun 27, 2022

• parse BGC profiles into DF

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Commits on Aug 29, 2022

• plan to query BGC profiles

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Commits on Sep 6, 2022

• validate BGC param input function

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Commits on Sep 12, 2022

• order BGC params in order in which they should be queried

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Commits on Sep 19, 2022

• fix bug in parse_into_df() - init blank df to take in union of params from all profiles

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Commits on Oct 3, 2022

• identify profiles from initial API request containing all required params

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Commits on Oct 24, 2022

• creates df with only profiles that contain all user specified params

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Commits on Nov 21, 2022

• modified to populate prof df by querying individual profiles

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Commits on Nov 28, 2022

• finished up BGC argo download!

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Commits on Jan 17, 2023

• assert bounding box type in Argo init, begin framework for unit tests

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Commits on Jan 23, 2023

• Adding argo search and download script

  

  kelseybisson

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  JessicaS11

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• Create get_argo.py

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  kelseybisson

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  JessicaS11

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• begin implementing argo dataset

  

  RomiP

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  JessicaS11

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• 1st draft implementing argo dataset

  

  RomiP

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  JessicaS11

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• implement search_data for physical argo

  

  RomiP

  authored and

  JessicaS11

  committed
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• doctests and general cleanup for physical argo query

  

  RomiP

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  JessicaS11

  committed
  6824d27

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• beginning of BGC Argo download

  

  RomiP

  authored and

  JessicaS11

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• parse BGC profiles into DF

  

  RomiP

  authored and

  JessicaS11

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  ae486f2

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• plan to query BGC profiles

  

  RomiP

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  JessicaS11

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  92f8a0d

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• validate BGC param input function

  

  RomiP

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  JessicaS11

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• order BGC params in order in which they should be queried

  

  RomiP

  authored and

  JessicaS11

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  747af3a

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• fix bug in parse_into_df() - init blank df to take in union of params from all profiles

  

  RomiP

  authored and

  JessicaS11

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  cf600c6

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• identify profiles from initial API request containing all required params

  

  RomiP

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  JessicaS11

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• creates df with only profiles that contain all user specified params

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  RomiP

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  JessicaS11

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• modified to populate prof df by querying individual profiles

  

  RomiP

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  JessicaS11

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• finished up BGC argo download!

  

  RomiP

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  JessicaS11

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• assert bounding box type in Argo init, begin framework for unit tests

  

  RomiP

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  JessicaS11

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Commits on Feb 6, 2023

• need to confirm spatial extent is bbox

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• begin test case for available profiles

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• Merge remote-tracking branch 'origin/argo' into argo

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• add tests for argo.py

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Commits on Feb 13, 2023

• add typing, add example json, and use it to test parsing

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Commits on May 22, 2023

• Merge branch 'development' into argo

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• update argo to submit successful api request (update keys and values submitted)

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Commits on May 30, 2023

• first pass at porting argo over to metadata+per profile download (WIP)

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Commits on Jun 6, 2023

• basic working argo script

  JessicaS11

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• simplify parameter validation (ordered list no longer needed)

  JessicaS11

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• add option to delete existing data before new download

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• continue cleaning up argo.py

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Commits on Jun 7, 2023

• fix download_by_profile to properly store all downloaded data

  JessicaS11

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• remove old get_argo.py script

  JessicaS11

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• remove _filter_profiles function in favor of submitting data kwarg in request

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• start filling in docstrings

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Commits on Jun 8, 2023

• clean up nearly duplicate functions

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• add more docstrings

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Commits on Jun 12, 2023

• get a few minimal argo tests working

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Commits on Jun 20, 2023

• add bgc argo params. begin adding merge for second download runs

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Commits on Jun 26, 2023

• some changes

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• Merge remote-tracking branch 'origin/argo' into argo

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Commits on Jul 7, 2023

• WIP test commit to see if can push to GH

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Commits on Jul 12, 2023

• WIP handling argo merge issue

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Commits on Jul 20, 2023

• update profile to df to return df and move merging to get_dataframe

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Commits on Jul 28, 2023

• Merge remote-tracking branch 'origin/argo' into argo

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• Merge remote-tracking branch 'origin/argo' into argo

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Commits on Jul 31, 2023

• merge profiles with existing df

  JessicaS11

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• clean up docstrings and code

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• add test_argo.py

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• Merge remote-tracking branch 'origin/argo' into argo

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• add prelim test case for adding to Argo df

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Commits on Aug 14, 2023

• remove sandbox files

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• remove bgc argo test file

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• update variables notebook from development

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Commits on Aug 16, 2023

• Merge remote-tracking branch 'origin/argo' into argo

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• simplify import statements

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Commits on Aug 18, 2023

• quickfix for granules error

  zachghiaccio

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• draft subpage on available QUEST datasets

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• small reference fix in text

  zachghiaccio

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• add reference to top of .rst file

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Commits on Aug 19, 2023

• Merge remote-tracking branch 'origin/argo' into argo

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• test argo df merge

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Commits on Aug 25, 2023

• Merge pull request #436 from zachghiaccio/argo

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Commits on Aug 28, 2023

• Merge branch 'development' into argo

  JessicaS11

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Commits on Aug 30, 2023

• update argo script from shared_search branch

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Commits on Sep 25, 2023

• update QUEST and GenQuery classes for argo integration (#441)

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Commits on Oct 6, 2023

• Merge branch 'development' into argo

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• fix incorrect merge conflict handling

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Commits on Oct 9, 2023

• uncomment argo portions of Quest

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Commits on Oct 10, 2023

• Drafted an example Jupyter notebook using both ICESat-2 and Argo through QUEST.

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Commits on Oct 11, 2023

• combine multiple argo test files

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Commits on Oct 18, 2023

• Removed redundant cells and code.

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• temporarily disable OpenAltimetry API tests (#459)

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• fix spot number calculation (#458)

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• Fix a broken link in IS2_data_access.ipynb (#456)

  whyjz

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• update Read input arguments (#444)

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Commits on Oct 19, 2023

• enable QUEST kwarg handling (#452)

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Commits on Oct 26, 2023

• docs: add rwegener2 as a contributor for bug, code, and 6 more (#460)

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• docs: add jpswinski as a contributor for review (#461)

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Commits on Oct 27, 2023

• docs: add whyjz as a contributor for tutorial (#462)

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Commits on Oct 31, 2023

• Link to QUEST dataset page went missing again. Fixed.

  zachghiaccio

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• Fixed typo in reference.

  zachghiaccio

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• Moved Argo workflow to Examples folder.

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• Add link to Argo workbook.

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Commits on Nov 1, 2023

• test argo script via a quest instance

  JessicaS11

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• clean up argo script

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• clean up quest tests

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• remove =None from required inputs

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• remove note from argo

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Commits on Nov 2, 2023

• add newest icepyx citations (#455)

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Commits on Nov 3, 2023

• Merge branch 'development' into argo

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• remove unused test data file

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• Update doc/source/contributing/quest-available-datasets.rst

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• fix formatting via linter

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• remove examples suggesting an Argo object can be created directly

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Commits on Nov 4, 2023

• Clarified that the new dataset guidelines are a work in progress.

  zachghiaccio

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• Cleanup of text in QUEST notebook.

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Commits on Nov 6, 2023

• GitHub action UML generation auto-update

  zachghiaccio

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• fix failing argo tests

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Commits on Nov 7, 2023

• Variables as an independent class (#451)

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Commits on Nov 8, 2023

• Merge branch 'development' into argo

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Commits on Nov 17, 2023

• Merge branch 'development' into argo

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• use factories as fixture test pattern

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• add quest module init file

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• streamline params and presRange handling, including docs+tests+ex

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Commits on Nov 21, 2023

• fix failing test due to list order

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Commits on Nov 27, 2023

• Addressed Jessica's suggestions for QUEST notebook.

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• remove duplicate QUEST page in docs

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• add some text to QUEST example notebook

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• Merge branch 'development' into argo

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Commits on Nov 28, 2023

• limit example notebook to one IS2 granule

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Commits on Dec 4, 2023

• fix indentation error and make params protected

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• skips when error downloading argo profile, save df to csv

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• use xarray to drop info before converting to df

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Commits on Dec 6, 2023

• implement save function in argo

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• Merge remote-tracking branch 'origin/argo' into argo

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• run black formatter on all files

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• Revert "run black formatter on all files"

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• run black formatter on files in this PR

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• Update doc/source/contributing/quest-available-datasets.rst

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• add docstring for new save_all fn

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• remove savename kwarg

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• standardize docstring spaces in argo.py

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• last updates to notebook

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• GitHub action UML generation auto-update

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