model update v1.1

iAMB-RWTH-Aachen · Oct 13, 2022 · eb76b9b · eb76b9b
1 parent bff56ee
commit eb76b9b
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Showing 8 changed files with 136,767 additions and 140 deletions.
diff --git a/code/AcetateBranchSims.ipynb b/code/AcetateBranchSims.ipynb
diff --git a/code/Becker22_UmaySubProdYields.ipynb b/code/Becker22_UmaySubProdYields.ipynb
diff --git a/code/RelAce_VS_C-fluxTot.png b/code/RelAce_VS_C-fluxTot.png
diff --git a/code/RelAce_VS_Ita.png b/code/RelAce_VS_Ita.png
diff --git a/code/iUma22_BiotechSimulations.ipynb b/code/iUma22_BiotechSimulations.ipynb
@@ -128,7 +128,7 @@
        "</table>"
       ],
       "text/plain": [
-       "<cobra.summary.model_summary.ModelSummary at 0x7f49753898e0>"
+       "<cobra.summary.model_summary.ModelSummary at 0x7f369d163d90>"
       ]
      },
      "execution_count": 2,
@@ -142,6 +142,31 @@
     "model.summary()"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'sbo': 'SBO:0000247',\n",
+       " 'biocyc': 'META:DIHYDROPTERIN-CH2OH-PP',\n",
+       " 'chebi': '57602',\n",
+       " 'inchi': 'InChI=1S/C7H11N5O8P2/c8-7-11-5-4(6(13)12-7)10-3(1-9-5)2-19-22(17,18)20-21(14,15)16/h1-2H2,(H,17,18)(H2,14,15,16)(H4,8,9,11,12,13)/p-3',\n",
+       " 'kegg.compound': 'C04807',\n",
+       " 'pubchem.compound': '25244074'}"
+      ]
+     },
+     "execution_count": 5,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "model.metabolites[0].annotation"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},