Feature/update_example_files

[alexdzm]

Context

We include full gate csvs, these are a standard IPA asset. A pdf is now in the example set

This PR contains:

• New features
• Changes to dev-tools e.g. CI config / github tooling
• Bug fixes
• Code refactor

[nmenezes0]

I think tests need to be updated - test_CreateDBPipeline.py and test_LLMFlag.py.

[alexdzm]

Sorry, can you narrow down witch parts of the tests?

[nmenezes0]

Sorry, can you narrow down witch parts of the tests?

The number of chunks will be different:

scout/tests/test_CreateDBPipeline.py

Line 58 in 3ff40e7

def test_create_db_from_local_dir(

And the number of results depending on which criteria I think?

scout/tests/test_LLMFlag.py

Line 49 in 3ff40e7

expected_counts = {**pre_flag_counts, "result": 3}