distinct

hms-dbmi · Jul 21, 2024 · f5924ab · f5924ab
1 parent b24ce80
commit f5924ab
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 8 deletions.
diff --git a/one_facet.sql b/one_facet.sql
@@ -1,3 +1,7 @@
+{"facets":[
+{"name":"LOINC","display":"LOINC","description":null,"count":1,"children":null,"category":"nsrr_harmonized","meta":null,"categoryRef":{"display":"Common Data Element Collection","name":"nsrr_harmonized","description":""}},
+{"name":"PhenX","display":"PhenX","description":null,"count":1,"children":null,"category":"nsrr_harmonized","meta":null,"categoryRef":{"display":"Common Data Element Collection","name":"nsrr_harmonized","description":""}}],"search":""}
+
 (
     SELECT
         facet.facet_id, count(*) as facet_count
@@ -10,7 +14,7 @@
         LEFT JOIN concept_node_meta AS continuous_max ON concept_node.concept_node_id = continuous_max.concept_node_id AND continuous_max.KEY = 'max'
         LEFT JOIN concept_node_meta AS categorical_values ON concept_node.concept_node_id = categorical_values.concept_node_id AND categorical_values.KEY = 'values'
     WHERE
-        fc.name = 'study_ids_dataset_ids'
+        fc.name = 'nsrr_harmonized'
         AND (
             continuous_min.value <> '' OR
             continuous_max.value <> '' OR
@@ -35,8 +39,8 @@ UNION
             LEFT JOIN concept_node_meta AS continuous_max ON concept_node.concept_node_id = continuous_max.concept_node_id AND continuous_max.KEY = 'max'
             LEFT JOIN concept_node_meta AS categorical_values ON concept_node.concept_node_id = categorical_values.concept_node_id AND categorical_values.KEY = 'values'
         WHERE
-            fc.name = 'study_ids_dataset_ids'
-            AND facet.name IN ('phs000007')
+            fc.name = 'nsrr_harmonized'
+            AND facet.name IN ('LOINC', 'PhenX')
             AND (
                 continuous_min.value <> '' OR
                 continuous_max.value <> '' OR
@@ -51,7 +55,7 @@ UNION
         JOIN facet_category fc on fc.facet_category_id = facet.facet_category_id
         JOIN matching_concepts ON fcn.concept_node_id = matching_concepts.concept_node_id
     WHERE
-        fc.name <> 'study_ids_dataset_ids'
+        fc.name <> 'nsrr_harmonized'
     GROUP BY
         facet.facet_id
     ORDER BY

diff --git a/src/main/java/edu/harvard/dbmi/avillach/dictionary/facet/FacetQueryGenerator.java b/src/main/java/edu/harvard/dbmi/avillach/dictionary/facet/FacetQueryGenerator.java
@@ -67,7 +67,7 @@ private String createMultiCategorySQLWithSearch(Map<String, List<Facet>> facets,
             return """
                 facet_category_%s_concepts AS (
                     SELECT
-                        concept_node.concept_node_id
+                        DISTINCT(concept_node.concept_node_id)
                     FROM
                         facet
                         JOIN facet__concept_node fcn ON fcn.facet_id = facet.facet_id
@@ -163,7 +163,7 @@ private String createMultiCategorySQLNoSearch(Map<String, List<Facet>> facets, M
             return """
                 facet_category_%s_concepts AS (
                     SELECT
-                        concept_node.concept_node_id
+                        DISTINCT(concept_node.concept_node_id)
                     FROM
                         facet
                         JOIN facet__concept_node fcn ON fcn.facet_id = facet.facet_id
@@ -283,7 +283,7 @@ facet.facet_id, count(*) as facet_count
                 (
                     WITH matching_concepts AS (
                         SELECT
-                            concept_node.concept_node_id AS concept_node_id
+                            DISTINCT(concept_node.concept_node_id AS concept_node_id)
                         FROM
                             facet
                             JOIN facet_category fc on fc.facet_category_id = facet.facet_category_id
@@ -352,7 +352,7 @@ facet.facet_id, count(*) as facet_count
                 (
                     WITH matching_concepts AS (
                         SELECT
-                            concept_node.concept_node_id AS concept_node_id
+                            DISTINCT(concept_node.concept_node_id AS concept_node_id)
                         FROM
                             facet
                             JOIN facet__concept_node fcn ON fcn.facet_id = facet.facet_id