Implement checkpoint/restart for RBC #397
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| name: Main application | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - Code/** | |
| - dependencies/** | |
| pull_request: | |
| schedule: | |
| # Run every Monday 0700 UTC | |
| - cron: '0 7 * * 1' | |
| workflow_dispatch: | |
| # Run on demand | |
| inputs: | |
| run_long_tests: | |
| required: true | |
| default: 'true' | |
| env: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| BUILD_TYPE: RelWithDebInfo | |
| deps_install_prefix: ${{github.workspace}}/deps-install | |
| hemelb_install_prefix: ${{github.workspace}}/install | |
| # VMs have 2 cores, double as compilation often IO bound | |
| CMAKE_BUILD_PARALLEL_LEVEL: 4 | |
| jobs: | |
| basic-checks: | |
| name: Basic code quality checks | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Check copyright statements | |
| run: python Scripts/checkCopyright.py | |
| - name: Check C++ include guards | |
| run: python Scripts/check_once_guards.py | |
| fluid_only_build: | |
| name: Build in fluid-only mode | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [gnu-11, gnu-12, gnu-13] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: ./.github/actions/setup-compilers | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| - uses: ./.github/actions/install-hemelb-deps | |
| with: | |
| name: fluidonly | |
| - name: Code make build dir | |
| run: mkdir -p ${{github.workspace}}/build | |
| - name: Code configure | |
| run: >- | |
| cmake | |
| -S ${{github.workspace}}/Code | |
| -B ${{github.workspace}}/build | |
| -DCMAKE_BUILD_TYPE=$BUILD_TYPE | |
| -DCMAKE_INSTALL_PREFIX:STRING=${{env.hemelb_install_prefix}} | |
| -DHEMELB_DEPENDENCIES_INSTALL_PREFIX:STRING=${{env.deps_install_prefix}} | |
| -DHEMELB_BUILD_RBC:BOOL=OFF | |
| -DMPIEXEC_MAX_NUMPROCS:STRING=4 | |
| - name: Build and install HemeLB, adding install dir to PATH | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| cmake --build . | |
| cmake --install . | |
| echo "${hemelb_install_prefix}/bin" >> $GITHUB_PATH | |
| - name: Run main unit tests | |
| working-directory: ${{github.workspace}}/build | |
| run: tests/hemelb-tests | |
| - name: Store build tree on error | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: fluid-only-failed-build-tree | |
| path: build | |
| - name: Get hemelb-tests repo | |
| uses: ./.github/actions/get-tests-repo | |
| with: | |
| path: hemelb-tests | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| - name: Install python tools (required by diff test) | |
| working-directory: python-tools | |
| run: pip install . | |
| - name: Run the simple regression test | |
| working-directory: hemelb-tests/diffTest | |
| env: | |
| MPIRUN_FLAGS: --oversubscribe | |
| NUMPROCS: 2 | |
| OFFSET_CHECK: light | |
| run: ./diffTest.sh | |
| - name: Store results on error | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: fluid-only-failed-diffTest | |
| path: hemelb-tests/diffTest/results | |
| - name: Run the checkpoint test | |
| working-directory: hemelb-tests/fluid-checkpoint | |
| env: | |
| MPIRUN_FLAGS: --oversubscribe | |
| run: ./run.sh | |
| - name: Store results on error | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: fluid-only-failed-checkpointTest | |
| path: hemelb-tests/fluid-checkpoint/results | |
| rbc_build: | |
| name: Build in RBC mode | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [gnu-11, gnu-12, gnu-13] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: ./.github/actions/setup-compilers | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| - uses: ./.github/actions/install-hemelb-deps | |
| with: | |
| name: rbc | |
| extra_apt: libhdf5-mpi-dev | |
| extra_cmake: '-DHEMELB_BUILD_RBC:BOOL=ON' | |
| - name: Code make build dir | |
| run: mkdir -p ${{github.workspace}}/build | |
| - name: Code configure | |
| run: >- | |
| cmake | |
| -S ${{github.workspace}}/Code | |
| -B ${{github.workspace}}/build | |
| -DCMAKE_BUILD_TYPE=$BUILD_TYPE | |
| -DHEMELB_DEPENDENCIES_INSTALL_PREFIX:STRING=${{env.deps_install_prefix}} | |
| -DHEMELB_BUILD_RBC:BOOL=ON | |
| -DMPIEXEC_MAX_NUMPROCS:STRING=4 | |
| - name: Build | |
| working-directory: ${{github.workspace}}/build | |
| run: cmake --build . | |
| - name: Run main unit tests | |
| working-directory: ${{github.workspace}}/build | |
| run: tests/hemelb-tests | |
| - name: Run parallel RBC tests | |
| working-directory: ${{github.workspace}}/build | |
| run: mpirun --oversubscribe -np 4 tests/mpi_redblood_tests | |
| - name: Run longer integration tests on schedule or request | |
| if: github.event == 'scheduled' || (github.event == 'workflow_dispatch' && inputs.run_long_tests == 'true') | |
| working-directory: ${{github.workspace}}/build | |
| run: tests/hemelb-tests [long] | |
| - name: Store build tree on error | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: rbc-failed-build-tree | |
| path: build |