Geometry tool #356
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Geometry tool | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '.github/workflows/gmy-*' | |
| - 'geometry-tool/**' | |
| - Code/util/Vector3D.cc | |
| - Code/geometry/SiteDataBare.cc | |
| - Code/lb/lattices/D3Q27.cc | |
| - Code/io/formats/geometry.cc | |
| - Code/io/writers/xdr/XdrFileWriter.cc | |
| - Code/io/writers/xdr/XdrMemWriter.cc | |
| - Code/io/writers/xdr/XdrWriter.cc | |
| - Code/io/writers/Writer.cc | |
| pull_request: | |
| schedule: | |
| # Run every Monday 0700 UTC | |
| - cron: '0 7 * * 1' | |
| jobs: | |
| lint-python: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Run black to check Python formatting | |
| working-directory: geometry-tool | |
| run: pip install black~=22.0 && black --check . | |
| lint-cpp: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Run clang-format | |
| working-directory: geometry-tool/HlbGmyTool/Model/Generation | |
| run: ${{ github.workspace }}/.github/workflows/run-clang-format.py --style file -r . | |
| gmy-tool: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| env: | |
| VMTK_VERSION: 1.5.0 | |
| VMTK_DIR: /opt/vmtk | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: APT packages | |
| env: | |
| DEBIAN_FRONTEND: noninteractive | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y --no-install-recommends \ | |
| libboost-dev \ | |
| libcgal-dev \ | |
| ninja-build \ | |
| libopengl0 libglx0 libxt6 | |
| - name: pip cache | |
| uses: actions/cache@v3 | |
| env: | |
| # Increase this value to reset cache | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/.cache/pip | |
| key: pip-${{ runner.os }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('geometry-tool/pyproject.toml', 'geometry-tool/setup.py') }} | |
| - name: ensure pip is up-to-date | |
| run: pip install --upgrade pip | |
| - name: Get and install VMTK from our builder | |
| run: | | |
| wget -nv -O vmtk.tar.gz https://github.com/hemelb-codes/vmtk-build/releases/download/v${VMTK_VERSION}/all-${VMTK_VERSION}-ubuntu-py${{ matrix.python-version }}.tar.gz | |
| mkdir -p $VMTK_DIR | |
| tar -xzf vmtk.tar.gz -C $VMTK_DIR | |
| echo "PATH=$VMTK_DIR/bin:$PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$VMTK_DIR/lib/python${{ matrix.python-version }}/site-packages:$PYTHONPATH" >> $GITHUB_ENV | |
| echo "CMAKE_PREFIX_PATH=$VMTK_DIR:$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| - name: Check setuptools sees VMTK | |
| run: | | |
| pip list | |
| pip list --format json | jq -e '.[] | select(.name == "vmtk")' | |
| - name: Store VMTK dir on error | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: failed-vmtk-tree | |
| path: ${{ env.VMTK_DIR }} | |
| - name: Build and install the app | |
| working-directory: geometry-tool | |
| run: pip install . | |
| - name: Store build tree on error | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: failed-build-tree | |
| path: geometry-tool/_skbuild | |
| - name: Install test dependencies | |
| working-directory: python-tools | |
| run: pip install pytest 'cython~=0.29' && python setup.py install | |
| - name: Run the tests | |
| working-directory: geometry-tool/tests | |
| run: py.test | |
| - name: Tar failed install | |
| if: failure() | |
| run: tar -czf fail-${{ matrix.python-version }}.tar.gz $pythonLocation | |
| - name: Store failed install | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: failed-python-${{ matrix.python-version }} | |
| path: fail-${{ matrix.python-version }}.tar.gz | |
| - name: Get hemelb-tests repo | |
| uses: ./.github/actions/get-tests-repo | |
| with: | |
| path: hemelb-tests | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| - name: Smoketest the update tool | |
| working-directory: hemelb-tests/diffTest | |
| run: hlb-config2gmy cyl.pro tmp.pr2 | |
| - name: Decompress input mesh | |
| working-directory: hemelb-tests/diffTest | |
| run: gunzip cyl.stl.gz | |
| - name: Run the gmy tool without GUI | |
| working-directory: hemelb-tests/diffTest | |
| run: | | |
| mkdir test | |
| hlb-gmy-cli --xml test/config.xml --geometry test/config.gmy cyl.pr2 | |
| - name: Run the self-consistency checker | |
| working-directory: hemelb-tests/diffTest/test | |
| run: hlb-gmy-selfconsistent config.xml | |
| - name: Count the sites | |
| working-directory: hemelb-tests/diffTest/test | |
| run: "[[ $(hlb-gmy-countsites config.gmy) == 44250 ]]" | |
| - name: Compare XML | |
| working-directory: hemelb-tests/diffTest | |
| run: python compare_xml.py config.xml test/config.xml | |
| - name: Compare GMY | |
| working-directory: hemelb-tests/diffTest | |
| run: python compare_gmy.py config.gmy test/config.gmy |