Add codespell/fix typos

.github/workflows/codespell.yaml

@@ -0,0 +1,22 @@
+---
+name: Codespell
+
+on:
+  push:
+    branches: [develop]
+  pull_request:
+    branches: [develop]
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2

hed/models/column_mapper.py

@@ -149,7 +149,7 @@ def _set_sidecar(self, sidecar):
             sidecar (Sidecar or None): the sidecar to use
 
         :raises ValueError:
-            - A sidecar was prevoiusly set
+            - A sidecar was previously set
         """
         if self._sidecar:
             raise ValueError("Trying to set a second sidecar on a column mapper.")

hed/models/expression_parser.py

@@ -235,7 +235,7 @@ def handle_expr(self, hed_group, exact=False):
 class ExpressionOr(Expression):
     def handle_expr(self, hed_group, exact=False):
         groups1 = self.left.handle_expr(hed_group, exact=exact)
-        # Don't early out as we need to gather all groups incase tags appear more than once etc
+        # Don't early out as we need to gather all groups in case tags appear more than once etc
         groups2 = self.right.handle_expr(hed_group, exact=exact)
         # todo: optimize this eventually
         # Filter out duplicates

hed/tools/remodeling/operations/remove_columns_op.py

@@ -6,8 +6,8 @@ class RemoveColumnsOp(BaseOp):
     """ Remove columns from a tabular file.
 
     Required remodeling parameters:
-        - **remove_names** (*list*): The names of the columns to be removed.  
-        - **ignore_missing** (*boolean*): If true, names in remove_names that are not columns in df should be ignored.  
+        - **column_names** (*list*): The names of the columns to be removed.
+        - **ignore_missing** (*boolean*): If true, names in column_names that are not columns in df should be ignored.
 
     """
 

hed/tools/remodeling/operations/rename_columns_op.py

@@ -8,7 +8,7 @@ class RenameColumnsOp (BaseOp):
 
     Required remodeling parameters:   
         - **column_mapping** (*dict*): The names of the columns to be removed.   
-        - **ignore_missing** (*bool*): If true, the names in remove_names that are not columns and should be ignored.   
+        - **ignore_missing** (*bool*): If true, the names in column_mapping that are not columns and should be ignored.
 
     """
 

pyproject.toml

@@ -1,3 +1,7 @@
 [build-system]
 requires = ["setuptools>=42", "versioneer-518"]
 build-backend = "setuptools.build_meta"
+
+[tool.codespell]
+skip = '*.git,*.pdf,*.xml,*.mediawiki,*.svg,versioneer.py,venv*,*.tsv,*.yaml,*.yml,*.json,*.rdf,*.jsonld,spec_tests'
+ignore-words-list = 'te,parms'