Run all tests #1032
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| name: Run all tests | |
| on: | |
| schedule: | |
| - cron: '0 5 * * *' # once per day at midnight ET | |
| push: | |
| tags: # run only on new tags that follow semver | |
| - '/^[0-9]+(\.[0-9]+)?(\.[0-9]+)?$/' | |
| workflow_dispatch: | |
| jobs: | |
| run-all-tests: | |
| # the only differences between this job and "run_tests.yml" is the "strategy.matrix.include" and the upload | |
| # distributions step. | |
| # GitHub Actions does not yet support YAML anchors, easily reusable components, or easy dynamic matrix | |
| # configurations based on the github event, so this job is duplicated for the most part | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.name }} | |
| cancel-in-progress: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-python3.9-minimum , test-tox-env: pytest-py39-minimum , python-ver: "3.9" , os: ubuntu-latest } | |
| - { name: linux-python3.10-upgraded , test-tox-env: pytest-py310-upgraded , python-ver: "3.10", os: ubuntu-latest } | |
| - { name: linux-python3.11-upgraded , test-tox-env: pytest-py311-upgraded , python-ver: "3.11", os: ubuntu-latest } | |
| - { name: linux-python3.12-upgraded , test-tox-env: pytest-py312-upgraded , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: linux-python3.13-upgraded , test-tox-env: pytest-py313-upgraded , python-ver: "3.13", os: ubuntu-latest } | |
| - { name: linux-python3.13-upgraded-optional , test-tox-env: pytest-py313-upgraded-optional , python-ver: "3.13", os: ubuntu-latest } | |
| - { name: linux-python3.13-prerelease-optional , test-tox-env: pytest-py313-prerelease-optional , python-ver: "3.13", os: ubuntu-latest } | |
| - { name: windows-python3.9-minimum , test-tox-env: pytest-py39-minimum , python-ver: "3.9" , os: windows-latest } | |
| - { name: windows-python3.10-upgraded , test-tox-env: pytest-py310-upgraded , python-ver: "3.10", os: windows-latest } | |
| - { name: windows-python3.11-upgraded , test-tox-env: pytest-py311-upgraded , python-ver: "3.11", os: windows-latest } | |
| - { name: windows-python3.12-upgraded , test-tox-env: pytest-py312-upgraded , python-ver: "3.12", os: windows-latest } | |
| - { name: windows-python3.13-upgraded , test-tox-env: pytest-py313-upgraded , python-ver: "3.13", os: windows-latest } | |
| - { name: windows-python3.13-upgraded-optional , test-tox-env: pytest-py313-upgraded-optional , python-ver: "3.13", os: windows-latest } | |
| - { name: windows-python3.13-prerelease-optional , test-tox-env: pytest-py313-prerelease-optional , python-ver: "3.13", os: windows-latest } | |
| - { name: macos-python3.9-minimum , test-tox-env: pytest-py39-minimum , python-ver: "3.9" , os: macos-13 } | |
| - { name: macos-python3.10-upgraded , test-tox-env: pytest-py310-upgraded , python-ver: "3.10", os: macos-latest } | |
| - { name: macos-python3.11-upgraded , test-tox-env: pytest-py311-upgraded , python-ver: "3.11", os: macos-latest } | |
| - { name: macos-python3.12-upgraded , test-tox-env: pytest-py312-upgraded , python-ver: "3.12", os: macos-latest } | |
| - { name: macos-python3.13-upgraded , test-tox-env: pytest-py313-upgraded , python-ver: "3.13", os: macos-latest } | |
| - { name: macos-python3.13-upgraded-optional , test-tox-env: pytest-py313-upgraded-optional , python-ver: "3.13", os: macos-latest } | |
| - { name: macos-python3.13-prerelease-optional , test-tox-env: pytest-py313-prerelease-optional , python-ver: "3.13", os: macos-latest } | |
| steps: | |
| - name: Checkout repo with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required to determine the version | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install tox | |
| python -m pip list | |
| - name: Run tox tests | |
| run: | | |
| tox -e ${{ matrix.test-tox-env }} | |
| - name: Build wheel and source distribution | |
| run: | | |
| tox -e build | |
| ls -1 dist | |
| - name: Test installation from a wheel | |
| run: | | |
| tox -e wheelinstall --installpkg dist/*-none-any.whl | |
| - name: Test installation from a source distribution | |
| run: | | |
| tox -e wheelinstall --installpkg dist/*.tar.gz | |
| run-all-gallery-tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.name }} | |
| cancel-in-progress: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # TODO: Update to 3.13 when linkml and its deps support 3.13 | |
| - { name: linux-gallery-python3.9-minimum , test-tox-env: gallery-py39-minimum , python-ver: "3.9" , os: ubuntu-latest } | |
| - { name: linux-gallery-python3.12-upgraded-optional , test-tox-env: gallery-py312-upgraded-optional , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: linux-gallery-python3.12-prerelease-optional , test-tox-env: gallery-py312-prerelease-optional , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: windows-gallery-python3.9-minimum , test-tox-env: gallery-py39-minimum , python-ver: "3.9" , os: windows-latest } | |
| - { name: windows-gallery-python3.12-upgraded-optional , test-tox-env: gallery-py312-upgraded-optional , python-ver: "3.12", os: windows-latest } | |
| - { name: windows-gallery-python3.12-prerelease-optional , test-tox-env: gallery-py312-prerelease-optional , python-ver: "3.12", os: windows-latest } | |
| - { name: macos-gallery-python3.9-minimum , test-tox-env: gallery-py39-minimum , python-ver: "3.9" , os: macos-13 } | |
| - { name: macos-gallery-python3.12-upgraded-optional , test-tox-env: gallery-py312-upgraded-optional , python-ver: "3.12", os: macos-latest } | |
| - { name: macos-gallery-python3.12-prerelease-optional , test-tox-env: gallery-py312-prerelease-optional , python-ver: "3.12", os: macos-latest } | |
| steps: | |
| - name: Checkout repo with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required to determine the version | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install tox | |
| python -m pip list | |
| - name: Run tox tests | |
| run: | | |
| tox -e ${{ matrix.test-tox-env }} | |
| run-ros3-tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} # necessary for conda | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.name }} | |
| cancel-in-progress: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-python3.13-ros3 , python-ver: "3.13", os: ubuntu-latest } | |
| - { name: windows-python3.13-ros3 , python-ver: "3.13", os: windows-latest } | |
| - { name: macos-python3.13-ros3 , python-ver: "3.13", os: macos-latest } | |
| steps: | |
| - name: Checkout repo with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required to determine the version | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: ros3 | |
| environment-file: environment-ros3.yml | |
| python-version: ${{ matrix.python-ver }} | |
| channels: conda-forge | |
| auto-activate-base: false | |
| - name: Install run dependencies | |
| run: | | |
| pip install . | |
| pip list | |
| - name: Conda reporting | |
| run: | | |
| conda info | |
| conda config --show-sources | |
| conda list --show-channel-urls | |
| - name: Run ros3 tests # TODO include gallery tests after they are written | |
| run: | | |
| pytest tests/unit/test_io_hdf5_streaming.py |