Jr 20241217 refine ips templates (#6597)

* clean up procedures template * immunization WIP * complete conversion of immunization template * medication template * fix broken integration test * template for history of illness * problem list template
hapifhir · Jan 8, 2025 · 544f832 · 544f832
1 parent a23d77b
commit 544f832
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Showing 8 changed files with 54 additions and 73 deletions.
diff --git a/hapi-fhir-base/src/main/java/ca/uhn/fhir/narrative/CustomThymeleafNarrativeGenerator.java b/hapi-fhir-base/src/main/java/ca/uhn/fhir/narrative/CustomThymeleafNarrativeGenerator.java
@@ -66,6 +66,10 @@ public CustomThymeleafNarrativeGenerator(List<String> theNarrativePropertyFiles)
 		this(theNarrativePropertyFiles.toArray(new String[0]));
 	}
 
+	public CustomThymeleafNarrativeGenerator(CustomThymeleafNarrativeGenerator theNarrativeGenerator) {
+		setManifest(theNarrativeGenerator.getManifest());
+	}
+
 	@Override
 	public NarrativeTemplateManifest getManifest() {
 		NarrativeTemplateManifest retVal = myManifest;

diff --git a/...ir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/allergyintolerance.html b/...ir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/allergyintolerance.html
@@ -31,16 +31,7 @@ <h5>Allergies And Intolerances</h5>
                <td th:insert="~{IpsUtilityFragments :: concatReactionManifestation (list=*{getReaction()})}">Reaction</td>
                <td th:insert="~{IpsUtilityFragments :: concat (list=*{getReaction()},attr='severity')}">Severity</td>
                <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
-
-               <th:block th:if="*{hasOnsetDateTimeType()}">
-                  <td th:text="*{getOnsetDateTimeType().getValueAsString()}">Onset</td>
-               </th:block>
-               <th:block th:if="*{hasOnsetStringType()}">
-                  <td th:text="*{getOnsetStringType().getValue()}">Onset</td>
-               </th:block>
-               <th:block th:if="*{!hasOnsetDateTimeType() && !hasOnsetStringType()}">
-                  <td></td>
-               </th:block>
+					<td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getOnset()})}">Date</td>
 
             </tr>
          </th:block>

diff --git a/...r-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/historyofprocedures.html b/...r-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/historyofprocedures.html
@@ -17,11 +17,11 @@ <h5>History Of Procedures</h5>
       <tbody>
       <th:block th:each="entry : ${resource.entry}" th:object="${entry.getResource()}">
          <th:block th:unless='*{getResourceType().name() == "Composition"}'>
-            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink').getValue().getValue()}">
-               <tr th:id="${#strings.arraySplit(extension, '#')[1]}">
+            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink')}">
+               <tr th:id="${extension != null} ? ${#strings.arraySplit(extension.getValue().getValue(), '#')[1]} : ''">
                   <td th:insert="~{IpsUtilityFragments :: codeableConcept (cc=*{getCode()},attr='display')}">Procedure</td>
                   <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
-                  <td th:insert="~{IpsUtilityFragments :: renderPerformed (performed=*{getPerformed()})}">Date</td>
+                  <td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getPerformed()})}">Date</td>
                </tr>
             </th:block>
          </th:block>

diff --git a/hapi-fhir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/immunizations.html b/hapi-fhir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/immunizations.html
@@ -25,15 +25,15 @@ <h5>Immunizations</h5>
       <tbody>
       <th:block th:each="entry : ${resource.entry}" th:object="${entry.getResource()}">
          <th:block th:if='*{getResourceType().name() == "Immunization"}'>
-            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink').getValue().getValue()}">
-               <tr th:id="${#strings.arraySplit(extension, '#')[1]}">
+            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink')}">
+               <tr th:id="${extension != null} ? ${#strings.arraySplit(extension.getValue().getValue(), '#')[1]} : ''">
                   <td th:insert="~{IpsUtilityFragments :: codeableConcept (cc=*{getVaccineCode()},attr='display')}">Immunization</td>
                   <td th:text="*{getStatusElement().value}">Status</td>
                   <td th:insert="~{IpsUtilityFragments :: concatDoseNumber (list=*{getProtocolApplied()})}">Comments</td>
-                  <td th:insert="~{IpsUtilityFragments :: renderOrganization (orgRef=*{getManufacturer()})}">Manufacturer</td>
+                  <td th:insert="~{IpsUtilityFragments :: renderVaccineManufacturer (immunization=${entry.getResource()})}">Manufacturer</td>
                   <td th:text="*{getLotNumber()}">Lot Number</td>
                   <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
-                  <td th:insert="~{IpsUtilityFragments :: renderOccurrence (occurrence=*{getOccurrence()})}">Date</td>
+                  <td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getOccurrence()})}">Date</td>
                </tr>
             </th:block>
          </th:block>

diff --git a/...hir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/medicationsummary.html b/...hir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/medicationsummary.html
@@ -35,20 +35,20 @@ <h5>Medication Summary: Medication Requests</h5>
 				<th:block th:if='*{getResourceType().name() == "MedicationRequest"}'>
 					<th:block th:unless='*{getResourceType().name() == "Composition"}'>
 						<th:block
-							th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink').getValue().getValue()}">
-							<tr th:id="${#strings.arraySplit(extension, '#')[1]}">
-								<td th:insert="~{IpsUtilityFragments :: renderMedication (medicationType=*{getMedication()})}">
+							th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink')}">
+							<tr th:id="${extension != null} ? ${#strings.arraySplit(extension.getValue().getValue(), '#')[1]} : ''">
+								<td th:insert="~{IpsUtilityFragments :: renderMedication (medicationType=${entry.getResource()})}">
 									Medication
 								</td>
-								<td th:text="*{getStatus().getDisplay()}">Status</td>
+								<td th:text="*{getStatus() != null} ? *{getStatus().getDisplay()} : ''">Status</td>
 								<td th:insert="~{IpsUtilityFragments :: concatDosageRoute (list=*{getDosageInstruction()})}">
 									Route
 								</td>
 								<td th:insert="~{IpsUtilityFragments :: concat (list=*{getDosageInstruction()},attr='text')}">
 									Sig
 								</td>
 								<td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
-								<td th:text="*{getAuthoredOnElement().getValue()}">Authored Date</td>
+								<td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getAuthoredOnElement()})}">Authored Date</td>
 							</tr>
 						</th:block>
 					</th:block>
@@ -74,15 +74,15 @@ <h5>Medication Summary: Medication Statements</h5>
 			<th:block th:each="entry : ${resource.entry}" th:object="${entry.getResource()}">
 				<th:block th:if='*{getResourceType().name() == "MedicationStatement"}'>
 					<th:block
-						th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink').getValue().getValue()}">
-						<tr th:id="${#strings.arraySplit(extension, '#')[1]}">
-							<td th:insert="~{IpsUtilityFragments :: renderMedication (medicationType=*{getMedication()})}">
+						th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink')}">
+						<tr th:id="${extension != null} ? ${#strings.arraySplit(extension.getValue().getValue(), '#')[1]} : ''">
+							<td th:insert="~{IpsUtilityFragments :: renderMedication (medicationType=${entry.getResource()})}">
 								Medication
 							</td>
-							<td th:text="*{getStatus().getDisplay()}">Status</td>
+							<td th:text="*{getStatus() != null} ? *{getStatus().getDisplay()} : ''">Status</td>
 							<td th:insert="~{IpsUtilityFragments :: concatDosageRoute (list=*{getDosage()})}">Route</td>
 							<td th:insert="~{IpsUtilityFragments :: concat (list=*{getDosage()},attr='text')}">Sig</td>
-							<td th:insert="~{IpsUtilityFragments :: renderEffective (effective=*{getEffective()})}">Date</td>
+							<td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getEffective()})}">Date</td>
 						</tr>
 					</th:block>
 				</th:block>

diff --git a/...-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/pasthistoryofillness.html b/...-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/pasthistoryofillness.html
@@ -19,12 +19,12 @@ <h5>Past History of Illnesses</h5>
       <tbody>
       <th:block th:each="entry : ${resource.entry}" th:object="${entry.getResource()}">
          <th:block th:unless='*{getResourceType().name() == "Composition"}'>
-            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink').getValue().getValue()}">
-               <tr th:id="${#strings.arraySplit(extension, '#')[1]}">
+            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink')}">
+               <tr th:id="${extension != null} ? ${#strings.arraySplit(extension.getValue().getValue(), '#')[1]} : ''">
                   <td th:insert="~{IpsUtilityFragments :: codeableConcept (cc=*{getCode()},attr='display')}">Medical Problem</td>
                   <td th:insert="~{IpsUtilityFragments :: codeableConcept (cc=*{getClinicalStatus()},attr='code')}">Status</td>
                   <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
-                  <td th:insert="~{IpsUtilityFragments :: renderOnset (onset=*{getOnset()})}">Onset Date</td>
+                  <td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getOnset()})}">Onset Date</td>
                </tr>
             </th:block>
          </th:block>

diff --git a/hapi-fhir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/problemlist.html b/hapi-fhir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/problemlist.html
@@ -19,12 +19,12 @@ <h5>Problem List</h5>
       <tbody>
       <th:block th:each="entry : ${resource.entry}" th:object="${entry.getResource()}">
          <th:block th:unless='*{getResourceType().name() == "Composition"}'>
-            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink').getValue().getValue()}">
-               <tr th:id="${#strings.arraySplit(extension, '#')[1]}">
+            <th:block th:with="extension=${entry.getResource().getExtensionByUrl('http://hl7.org/fhir/StructureDefinition/narrativeLink')}">
+               <tr th:id="${extension != null} ? ${#strings.arraySplit(extension.getValue().getValue(), '#')[1]} : ''">
                   <td th:insert="~{IpsUtilityFragments :: codeableConcept (cc=*{getCode()},attr='display')}">Medical Problems</td>
                   <td th:insert="~{IpsUtilityFragments :: codeableConcept (cc=*{getClinicalStatus()},attr='code')}">Status</td>
                   <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
-                  <td th:insert="~{IpsUtilityFragments :: renderOnset (onset=*{getOnset()})}">Onset Date</td>
+                  <td th:insert="~{IpsUtilityFragments :: renderTime (time=*{getOnset()})}">Onset Date</td>
                </tr>
             </th:block>
          </th:block>

diff --git a/...hir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/utility-fragments.html b/...hir-jpaserver-ips/src/main/resources/ca/uhn/fhir/jpa/ips/narrative/utility-fragments.html
@@ -22,21 +22,33 @@
    </th:block>
 </th:block>
 
+<th:block th:if="${immunization}" th:fragment="renderVaccineManufacturer (immunization)">
+	<th:block th:with="organization = ${#fhirpath.evaluateFirst(immunization, 'manufacturer.resolve()')}">
+		<th:block th:if="${organization != null}">
+			<th:block th:if='${organization.getResourceType().name() == "Organization"}'>
+				<th:block th:text="${organization.getName()}">Org Name</th:block>
+			</th:block>
+		</th:block>
+	</th:block>
+</th:block>
+
 <th:block th:fragment="renderMedication (medicationType)">
    <th:block th:if="${medicationType} != null" th:object="${medicationType}">
-      <th:block th:switch="*{getClass().getSimpleName()}">
-         <th:block th:case="'CodeableConcept'">
-            <th:block th:replace=":: codeableConcept (cc=${medicationType}, attr='display')">Medication</th:block>
-         </th:block>
-         <th:block th:case="'Reference'">
-            <th:block th:replace=":: renderMedicationRef (medicationRef=${medicationType})">Medication</th:block>
-         </th:block>
-      </th:block>
+		<th:block th:if="*{getMedication() != null}">
+			<th:block th:switch="*{getMedication().getClass().getSimpleName()}">
+				<th:block th:case="'CodeableConcept'">
+					<th:block th:replace=":: codeableConcept (cc=${medicationType.getMedication()}, attr='display')">Medication</th:block>
+				</th:block>
+				<th:block th:case="'Reference'">
+					<th:block th:replace=":: renderMedicationRef (medicationRef=${medicationType})">Medication</th:block>
+				</th:block>
+			</th:block>
+		</th:block>
    </th:block>
 </th:block>
 
 <th:block th:if="${medicationRef}" th:fragment="renderMedicationRef (medicationRef)">
-   <th:block th:with="medication = ${#fhirpath.evaluateFirst(medicationRef, 'resolve()')}">
+   <th:block th:with="medication = ${#fhirpath.evaluateFirst(medicationRef, 'medication.resolve()')}">
       <th:block  th:if="${medication != null}">
          <th:block th:replace=":: renderMedicationCode (medication=${medication})">Medication</th:block>
       </th:block>
@@ -94,49 +106,23 @@
    </th:block>
 </th:block>
 
-<th:block th:if="${onset}" th:fragment="renderOnset (onset)">
-   <th:block th:if="${onset} != null" th:object="${onset}">
+<th:block th:if="${time}" th:fragment="renderTime (time)">
+   <th:block th:if="${time} != null" th:object="${time}">
       <th:block th:switch="*{getClass().getSimpleName()}">
-         <th:block th:case="'DateTimeType'" th:text="*{getValue()}">Date</th:block>
+         <th:block th:case="'DateTimeType'" th:text="*{getValueAsString()}">Date</th:block>
          <th:block th:case="'Period'"
-                   th:text="*{#strings.concatReplaceNulls('', getStartElement().getValue(), '-', getEndElement().getValue() )}">
+                   th:text="*{#strings.concatReplaceNulls('', getStartElement().getValueAsString(), ' - ', getEndElement().getValueAsString() )}">
             Date
          </th:block>
          <th:block th:case="'Age'" th:text="*{getValue()}">Date</th:block>
          <th:block th:case="'Range'"
-                   th:text="*{#strings.concatReplaceNulls('', getLow().getValue(), '-', getHigh().getValue() )}">Date
+                   th:text="*{#strings.concatReplaceNulls('', getLow().getValueAsString(), ' - ', getHigh().getValueAsString() )}">Date
          </th:block>
          <th:block th:case="'StringType'" th:text="*{getValue()}">Date</th:block>
       </th:block>
    </th:block>
 </th:block>
 
-<th:block th:if="${performed}" th:fragment="renderPerformed (performed)">
-   <th:block th:if="${performed} != null" th:object="${performed}">
-      <th:block th:switch="*{getClass().getSimpleName()}">
-         <th:block th:case="'DateTimeType'" th:text="*{getValue()}">Date</th:block>
-         <th:block th:case="'Period'"
-                   th:text="*{#strings.concatReplaceNulls('', getStartElement().getValue(), '-', getEndElement().getValue() )}">
-            Date
-         </th:block>
-         <th:block th:case="'Age'" th:text="*{getValue()}">Date</th:block>
-         <th:block th:case="'Range'"
-                   th:text="*{#strings.concatReplaceNulls('', getLow().getValue(), '-', getHigh().getValue() )}">Date
-         </th:block>
-         <th:block th:case="'StringType'" th:text="*{getValue()}">Date</th:block>
-      </th:block>
-   </th:block>
-</th:block>
-
-<th:block th:if="${occurrence}" th:fragment="renderOccurrence (occurrence)">
-   <th:block th:if="${occurrence} != null" th:object="${occurrence}">
-      <th:block th:switch="*{getClass().getSimpleName()}">
-         <th:block th:case="'DateTimeType'" th:text="*{getValue()}">Date</th:block>
-         <th:block th:case="'StringType'" th:text="*{getValue()}">Date</th:block>
-      </th:block>
-   </th:block>
-</th:block>
-
 <th:block th:if="${recorded}" th:fragment="renderRecorded (recorded)">
    <th:block th:if="${recorded} != null" th:object="${recorded}">
       <th:block th:switch="*{getClass().getSimpleName()}">