Skip to content

Commit

Permalink
Update mnsf-tutorial-mouse.md
Browse files Browse the repository at this point in the history
  • Loading branch information
yiwang12 authored Nov 12, 2024
1 parent 54ea99b commit 85be1dd
Showing 1 changed file with 0 additions and 20 deletions.
20 changes: 0 additions & 20 deletions tutorial/mnsf-tutorial-mouse.md
Original file line number Diff line number Diff line change
Expand Up @@ -380,26 +380,6 @@ During training, you should monitor:
2. Training progress: Watch for convergence
3. Error messages: May indicate need to adjust parameters

### 6.6 Best Practices

1. **Induced Points Selection**:
- Start with 15% of total spots
- Increase if results seem unstable
- Decrease if memory usage is too high
- Monitor impact on biological interpretability

2. **Chunk Size Management**:
- Start with 2 chunks per sample
- Increase if memory errors occur
- Consider your hardware limitations
- Balance processing time vs. memory usage

3. **Training Duration**:
- Use at least 100 epochs for real data
- Monitor convergence of loss function
- Consider early stopping if loss plateaus
- Balance training time vs. model accuracy


## 7. Visualizing Results

Expand Down

0 comments on commit 85be1dd

Please sign in to comment.