Support NumPy 2 #1004
Workflow file for this run
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# This workflow runs only on Ubuntu and aims to be more complete than the Mac and Windows workflows. | |
# In particular, Openbabel and many of the external command line dependencies are included for testing.defaults: | |
# The ext package is also only tested in this workflow. Coverage is also computed based on this platform. | |
name: Testing | |
permissions: | |
contents: read | |
env: | |
PYTEST_ADDOPTS: "--color=yes" | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
workflow_dispatch: | |
inputs: | |
fullTest: | |
description: "run full test" | |
required: true | |
default: false | |
type: boolean | |
jobs: | |
test: | |
strategy: | |
matrix: | |
python-version: ["3.9", "3.10", "3.11"] | |
mongodb-version: ['4.0'] | |
fail-fast: false | |
runs-on: ubuntu-latest | |
env: | |
PMG_MAPI_KEY: ${{ secrets.PMG_MAPI_KEY }} | |
MPDS_KEY: ${{ secrets.MPDS_KEY }} | |
CITRINATION_API_KEY: ${{ secrets.CITRINATION_API_KEY }} | |
RUNNING_ON_GHACTIONS: "True" | |
MPLBACKEND: "Agg" | |
MATMINER_DATASET_FULL_TEST: ${{ inputs.fullTest }} | |
services: | |
mongo: | |
image: mongo:4 | |
ports: | |
- 27017:27017 | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: "pip" | |
cache-dependency-path: '**/setup.py' | |
- name: Install Python dependencies | |
run: | | |
python${{ matrix.python-version }} -m pip install --upgrade pip pip-tools setuptools setuptools_scm | |
python${{ matrix.python-version }} -m piptools sync --user requirements/ubuntu-latest_py${{ matrix.python-version }}.txt | |
# Using non-editable install for testing building of MANIFEST files | |
python${{ matrix.python-version }} -m pip install --no-deps . | |
python${{ matrix.python-version }} -m pip install pre-commit | |
- name: linting | |
run: | | |
pre-commit run --all-files | |
- name: Run tests | |
run: | | |
python${{ matrix.python-version }} -m pytest --cov=matminer matminer --durations=20 --timeout=360 | |
- name: Build package | |
if: matrix.python-version == 3.9 | |
run: | | |
python${{ matrix.python-version }} -m pip install --upgrade pip build setuptools setuptools_scm wheel | |
python${{ matrix.python-version }} -m build | |
auto-gen-release: | |
needs: | |
- test | |
runs-on: ubuntu-latest | |
if: github.repository == 'hackingmaterials/matminer' | |
env: | |
GITHUB_TOKEN: ${{ secrets.PAT }} | |
steps: | |
- uses: rymndhng/[email protected] | |
with: | |
bump_version_scheme: norelease |