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Issues list

Differential gene set enrichment analysis
#49 opened Mar 14, 2024 by abearab
Option to assign single enrichment score instead of scores per bins
#48 opened Nov 30, 2023 by abearab
1
Error in .filter_pathways method
#47 opened Aug 30, 2023 by abearab
2
A method to draw heatmap from given enrichment score matrix
#46 opened Aug 30, 2023 by abearab
Parallelization
#40 opened Jul 4, 2022 by artemy-bakulin
New discretization function
#39 opened Jul 3, 2022 by artemy-bakulin
3
Expose Heatmap kwargs to the user from PAGE.heatmap() API Improvements or additions to the API enhancement New feature or request
#37 opened Jun 28, 2022 by noamteyssier
2
Clean up the code in read annotation file in GeneOntology API Improvements or additions to the API documentation Improvements or additions to documentation Testing Write up a test
#36 opened Jun 28, 2022 by noamteyssier
1
Exploring histogram binning for gene ontology data question Further information is requested
#35 opened Jun 28, 2022 by noamteyssier
@artemy-bakulin
1
Generate Bins on ExpressionProfile after Finding Gene Intersection Algorithmic Algorithmic Improvements bug Something isn't working
#34 opened Jun 27, 2022 by noamteyssier
1
fix print bug in expression object bug Something isn't working
#31 opened Jun 1, 2022 by noamteyssier
Introduce gene -> pathway mapping as a networkx object API Improvements or additions to the API enhancement New feature or request
#30 opened May 16, 2022 by noamteyssier
update readme with new self changes bug Something isn't working documentation Improvements or additions to documentation
#29 opened May 10, 2022 by noamteyssier
Keep a record of the pathways filtered and what pathway it was collapsed into enhancement New feature or request
#21 opened May 4, 2022 by noamteyssier
Write up a command line interface CLI Command Line Interface
#20 opened Apr 29, 2022 by noamteyssier
Write up a tutorial for example usage documentation Improvements or additions to documentation
#19 opened Apr 28, 2022 by noamteyssier
1
Implement collapsing on gene homology Algorithmic Algorithmic Improvements enhancement New feature or request
#12 opened Apr 27, 2022 by noamteyssier
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