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Neranjan Perera edited this page Dec 3, 2018 · 1 revision

Welcome to the Variant_Detection_GATK wiki!

Toggle table of contents Pages 11

Home
01 Introduction
02 Data Download
03 Preparing the Reference Sequence
04 Aligning of Reads
05 SAM to BAM Conversion and Remove Singletons
06 Sort BAM files using PICARD
07 Remove PCR Duplicates using PICARD
08 Add Read Group Information
09 Reorder BAM file
10 Variant Calling

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