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Run the tests for release 1.4
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goksel committed Apr 24, 2022
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{
"@id" : "urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791",
"@id" : "urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58",
"@type" : "sbol:Component",
"hasNamespace" : "urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65",
"hasNamespace" : "urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb",
"name" : "TetR",
"type" : "SBO:0000252",
"@context" : {
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@@ -1,10 +1,10 @@
[ {
"@id" : "urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791",
"@id" : "urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58",
"http://sbols.org/v3#name" : [ {
"@value" : "TetR"
} ],
"http://sbols.org/v3#hasNamespace" : [ {
"@id" : "urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65"
"@id" : "urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb"
} ],
"http://sbols.org/v3#type" : [ {
"@id" : "https://identifiers.org/SBO:0000252"
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@@ -1,4 +1,4 @@
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://sbols.org/v3#hasNamespace> <urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65> .
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#hasNamespace> <urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
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xmlns="https://sbolstandard.org/examples/"
xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/"
xml:base="https://sbolstandard.org/examples/">
<sbol:Component rdf:about="urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791">
<sbol:Component rdf:about="urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58">
<sbol:name>TetR</sbol:name>
<sbol:hasNamespace rdf:resource="urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65"/>
<sbol:hasNamespace rdf:resource="urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb"/>
<sbol:type rdf:resource="https://identifiers.org/SBO:0000252"/>
</sbol:Component>
</rdf:RDF>
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@@ -1,13 +1,13 @@
{
"urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791" : {
"urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58" : {
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type" : [ {
"type" : "uri" ,
"value" : "http://sbols.org/v3#Component"
}
] ,
"http://sbols.org/v3#hasNamespace" : [ {
"type" : "uri" ,
"value" : "urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65"
"value" : "urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb"
}
] ,
"http://sbols.org/v3#name" : [ {
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@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791>
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58>
a sbol:Component ;
sbol:hasNamespace <urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65> ;
sbol:hasNamespace <urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb> ;
sbol:name "TetR" ;
sbol:type SBO:0000252 .
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@@ -1,4 +1,4 @@
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://sbols.org/v3#hasNamespace> <urn:uuid:96490ef1-6634-4491-b0bf-5fa60700ab65> .
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:41b542eb-8b0c-43fd-adf0-cea213b67791> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#hasNamespace> <urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
10 changes: 5 additions & 5 deletions libSBOLj3/output/provenance_entity/activity/activity.jsonld
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"hasNamespace" : "https://sbolstandard.org/examples",
"name" : "Codon optimization activity",
"type" : "sbol:design",
"endedAtTime" : "2020-08-30T10:35:19.16Z",
"endedAtTime" : "2020-08-30T10:42:52.292Z",
"qualifiedAssociation" : "https://sbolstandard.org/examples/codon_optimization_activity/Association1",
"qualifiedUsage" : [ "https://sbolstandard.org/examples/codon_optimization_activity/Usage2", "https://sbolstandard.org/examples/codon_optimization_activity/Usage1" ],
"startedAtTime" : "2019-07-29T10:35:19.16Z"
"startedAtTime" : "2019-07-29T10:42:52.292Z"
}, {
"@id" : "https://sbolstandard.org/examples/codon_optimization_activity/Association1",
"@type" : [ "sbol:Identified", "prov:Association" ],
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"@id" : "http://www.w3.org/ns/prov#entity",
"@type" : "@id"
},
"endedAtTime" : {
"@id" : "http://www.w3.org/ns/prov#endedAtTime"
},
"startedAtTime" : {
"@id" : "http://www.w3.org/ns/prov#startedAtTime"
},
"qualifiedUsage" : {
"@id" : "http://www.w3.org/ns/prov#qualifiedUsage",
"@type" : "@id"
},
"endedAtTime" : {
"@id" : "http://www.w3.org/ns/prov#endedAtTime"
},
"qualifiedAssociation" : {
"@id" : "http://www.w3.org/ns/prov#qualifiedAssociation",
"@type" : "@id"
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"http://sbols.org/v3#type" : [ {
"@id" : "http://sbols.org/v3#design"
} ],
"http://www.w3.org/ns/prov#endedAtTime" : [ {
"@value" : "2020-08-30T10:35:19.16Z"
} ],
"http://www.w3.org/ns/prov#startedAtTime" : [ {
"@value" : "2019-07-29T10:35:19.16Z"
"@value" : "2019-07-29T10:42:52.292Z"
} ],
"@type" : [ "http://sbols.org/v3#TopLevel", "http://www.w3.org/ns/prov#Activity" ],
"http://sbols.org/v3#name" : [ {
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"http://sbols.org/v3#displayId" : [ {
"@value" : "codon_optimization_activity"
} ],
"http://www.w3.org/ns/prov#endedAtTime" : [ {
"@value" : "2020-08-30T10:42:52.292Z"
} ],
"http://www.w3.org/ns/prov#qualifiedAssociation" : [ {
"@id" : "https://sbolstandard.org/examples/codon_optimization_activity/Association1"
} ],
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4 changes: 2 additions & 2 deletions libSBOLj3/output/provenance_entity/activity/activity.nt
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<https://sbolstandard.org/examples/CodonOptimisationProtocol> <http://sbols.org/v3#displayId> "CodonOptimisationProtocol" .
<https://sbolstandard.org/examples/CodonOptimisationProtocol> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Plan> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://sbols.org/v3#type> <http://sbols.org/v3#design> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#endedAtTime> "2020-08-30T10:35:19.16Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#startedAtTime> "2019-07-29T10:35:19.16Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#startedAtTime> "2019-07-29T10:42:52.292Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://sbols.org/v3#name> "Codon optimization activity" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://sbols.org/v3#description> "An activity that is used to optimise codons" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#qualifiedUsage> <https://sbolstandard.org/examples/codon_optimization_activity/Usage2> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Activity> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://sbols.org/v3#displayId> "codon_optimization_activity" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#endedAtTime> "2020-08-30T10:42:52.292Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#qualifiedAssociation> <https://sbolstandard.org/examples/codon_optimization_activity/Association1> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://sbols.org/v3#hasNamespace> <https://sbolstandard.org/examples> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#qualifiedUsage> <https://sbolstandard.org/examples/codon_optimization_activity/Usage1> .
4 changes: 2 additions & 2 deletions libSBOLj3/output/provenance_entity/activity/activity.rdf
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Expand Up @@ -55,8 +55,7 @@
</sbol:TopLevel>
<sbol:TopLevel rdf:about="codon_optimization_activity">
<sbol:type rdf:resource="http://sbols.org/v3#design"/>
<prov:endedAtTime>2020-08-30T10:35:19.16Z</prov:endedAtTime>
<prov:startedAtTime>2019-07-29T10:35:19.16Z</prov:startedAtTime>
<prov:startedAtTime>2019-07-29T10:42:52.292Z</prov:startedAtTime>
<sbol:name>Codon optimization activity</sbol:name>
<sbol:description>An activity that is used to optimise codons</sbol:description>
<prov:qualifiedUsage>
Expand All @@ -69,6 +68,7 @@
</prov:qualifiedUsage>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<sbol:displayId>codon_optimization_activity</sbol:displayId>
<prov:endedAtTime>2020-08-30T10:42:52.292Z</prov:endedAtTime>
<prov:qualifiedAssociation>
<sbol:Identified rdf:about="codon_optimization_activity/Association1">
<prov:hadRole rdf:resource="http://sbols.org/v3#design"/>
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4 changes: 2 additions & 2 deletions libSBOLj3/output/provenance_entity/activity/activity.rj
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Expand Up @@ -146,12 +146,12 @@
] ,
"http://www.w3.org/ns/prov#endedAtTime" : [ {
"type" : "literal" ,
"value" : "2020-08-30T10:35:19.16Z"
"value" : "2020-08-30T10:42:52.292Z"
}
] ,
"http://www.w3.org/ns/prov#startedAtTime" : [ {
"type" : "literal" ,
"value" : "2019-07-29T10:35:19.16Z"
"value" : "2019-07-29T10:42:52.292Z"
}
] ,
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type" : [ {
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4 changes: 2 additions & 2 deletions libSBOLj3/output/provenance_entity/activity/activity.ttl
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Expand Up @@ -75,7 +75,7 @@
sbol:hasNamespace <https://sbolstandard.org/examples> ;
sbol:name "Codon optimization activity" ;
sbol:type sbol:design ;
prov:endedAtTime "2020-08-30T10:35:19.16Z" ;
prov:endedAtTime "2020-08-30T10:42:52.292Z" ;
prov:qualifiedAssociation <codon_optimization_activity/Association1> ;
prov:qualifiedUsage <codon_optimization_activity/Usage2> , <codon_optimization_activity/Usage1> ;
prov:startedAtTime "2019-07-29T10:35:19.16Z" .
prov:startedAtTime "2019-07-29T10:42:52.292Z" .
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Expand Up @@ -41,11 +41,11 @@
<https://sbolstandard.org/examples/codon_optimization_activity> <http://sbols.org/v3#type> <http://sbols.org/v3#design> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/ns/prov#Activity> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#endedAtTime> "2020-08-30T10:35:19.16Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#endedAtTime> "2020-08-30T10:42:52.292Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#qualifiedAssociation> <https://sbolstandard.org/examples/codon_optimization_activity/Association1> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#qualifiedUsage> <https://sbolstandard.org/examples/codon_optimization_activity/Usage1> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#qualifiedUsage> <https://sbolstandard.org/examples/codon_optimization_activity/Usage2> .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#startedAtTime> "2019-07-29T10:35:19.16Z" .
<https://sbolstandard.org/examples/codon_optimization_activity> <http://www.w3.org/ns/prov#startedAtTime> "2019-07-29T10:42:52.292Z" .
<https://sbolstandard.org/examples/toggle_switch> <http://sbols.org/v3#description> "Toggle Switch genetic circuit" .
<https://sbolstandard.org/examples/toggle_switch> <http://sbols.org/v3#displayId> "toggle_switch" .
<https://sbolstandard.org/examples/toggle_switch> <http://sbols.org/v3#hasNamespace> <https://sbolstandard.org/examples> .
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2 changes: 1 addition & 1 deletion libSBOLj3/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<groupId>org.sbolstandard</groupId>
<artifactId>libSBOLj3</artifactId>
<packaging>jar</packaging>
<version>1.5-SNAPSHOT</version>
<version>1.4-SNAPSHOT</version>
<name>libSBOLj3</name>
<url>https://github.com/goksel/libSBOLj3</url>
<issueManagement>
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