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Merging release 1.4
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goksel committed Apr 24, 2022
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@base <https://synbiohub.org/public/igem/> .
@prefix : <https://synbiohub.org/public/igem/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

<BBa_F2620/SubComponent3/Range1>
a sbol:Range ;
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8 changes: 4 additions & 4 deletions libSBOLj3/output/combine2020/combine2020.ttl
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@@ -1,13 +1,13 @@
@base <https://synbiohub.org/public/igem/> .
@prefix : <https://synbiohub.org/public/igem/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

<i13504_system/Interaction1>
a sbol:Interaction ;
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10 changes: 5 additions & 5 deletions libSBOLj3/output/entity/annotation/annotation.ttl
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@@ -1,14 +1,14 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix igem: <http://parts.igem.org/> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix igem: <http://parts.igem.org/> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

<BBa_J23119/usage1> a sbol:Identified , igem:IGEMUsage ;
igem:inStock "true" ;
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6 changes: 3 additions & 3 deletions libSBOLj3/output/entity/attachment/attachment.jsonld
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"hasNamespace" : "https://sbolstandard.org/examples"
} ],
"@context" : {
"hashAlgorithm" : {
"@id" : "http://sbols.org/v3#hashAlgorithm"
},
"hash" : {
"@id" : "http://sbols.org/v3#hash"
},
"hashAlgorithm" : {
"@id" : "http://sbols.org/v3#hashAlgorithm"
},
"size" : {
"@id" : "http://sbols.org/v3#size"
},
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6 changes: 3 additions & 3 deletions libSBOLj3/output/entity/attachment/attachment.jsonld_expanded
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Expand Up @@ -21,12 +21,12 @@
"@type" : [ "http://sbols.org/v3#Component" ]
}, {
"@id" : "https://sbolstandard.org/examples/attachment1",
"http://sbols.org/v3#hashAlgorithm" : [ {
"@value" : "Alg1"
} ],
"http://sbols.org/v3#hash" : [ {
"@value" : "aaa"
} ],
"http://sbols.org/v3#hashAlgorithm" : [ {
"@value" : "Alg1"
} ],
"http://sbols.org/v3#size" : [ {
"@value" : "1000"
} ],
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2 changes: 1 addition & 1 deletion libSBOLj3/output/entity/attachment/attachment.nt
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@@ -1,5 +1,5 @@
<https://sbolstandard.org/examples/attachment1> <http://sbols.org/v3#hashAlgorithm> "Alg1" .
<https://sbolstandard.org/examples/attachment1> <http://sbols.org/v3#hash> "aaa" .
<https://sbolstandard.org/examples/attachment1> <http://sbols.org/v3#hashAlgorithm> "Alg1" .
<https://sbolstandard.org/examples/attachment1> <http://sbols.org/v3#size> "1000" .
<https://sbolstandard.org/examples/attachment1> <http://sbols.org/v3#format> <https://identifiers.org/edam:format_2585> .
<https://sbolstandard.org/examples/attachment1> <http://sbols.org/v3#source> <https://sbolstandard.org/attachment1> .
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2 changes: 1 addition & 1 deletion libSBOLj3/output/entity/attachment/attachment.rdf
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Expand Up @@ -29,8 +29,8 @@
<sbol:displayId>TetR_protein</sbol:displayId>
</sbol:Component>
<sbol:Attachment rdf:about="attachment1">
<sbol:hashAlgorithm>Alg1</sbol:hashAlgorithm>
<sbol:hash>aaa</sbol:hash>
<sbol:hashAlgorithm>Alg1</sbol:hashAlgorithm>
<sbol:size>1000</sbol:size>
<sbol:format rdf:resource="https://identifiers.org/edam:format_2585"/>
<sbol:source rdf:resource="/attachment1"/>
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8 changes: 4 additions & 4 deletions libSBOLj3/output/entity/attachment/attachment.ttl
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@@ -1,13 +1,13 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

:attachment1 a sbol:Attachment ;
sbol:displayId "attachment1" ;
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8 changes: 4 additions & 4 deletions libSBOLj3/output/entity/collection/collection.ttl
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@@ -1,13 +1,13 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

:col1 a sbol:Collection ;
sbol:displayId "col1" ;
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@@ -1,7 +1,7 @@
{
"@id" : "urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96",
"@id" : "urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58",
"@type" : "sbol:Component",
"hasNamespace" : "urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9",
"hasNamespace" : "urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb",
"name" : "TetR",
"type" : "SBO:0000252",
"@context" : {
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@@ -1,10 +1,10 @@
[ {
"@id" : "urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96",
"@id" : "urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58",
"http://sbols.org/v3#name" : [ {
"@value" : "TetR"
} ],
"http://sbols.org/v3#hasNamespace" : [ {
"@id" : "urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9"
"@id" : "urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb"
} ],
"http://sbols.org/v3#type" : [ {
"@id" : "https://identifiers.org/SBO:0000252"
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@@ -1,4 +1,4 @@
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://sbols.org/v3#hasNamespace> <urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9> .
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#hasNamespace> <urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
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Expand Up @@ -10,9 +10,9 @@
xmlns="https://sbolstandard.org/examples/"
xmlns:om="http://www.ontology-of-units-of-measure.org/resource/om-2/"
xml:base="https://sbolstandard.org/examples/">
<sbol:Component rdf:about="urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96">
<sbol:Component rdf:about="urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58">
<sbol:name>TetR</sbol:name>
<sbol:hasNamespace rdf:resource="urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9"/>
<sbol:hasNamespace rdf:resource="urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb"/>
<sbol:type rdf:resource="https://identifiers.org/SBO:0000252"/>
</sbol:Component>
</rdf:RDF>
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@@ -1,13 +1,13 @@
{
"urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96" : {
"urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58" : {
"http://www.w3.org/1999/02/22-rdf-syntax-ns#type" : [ {
"type" : "uri" ,
"value" : "http://sbols.org/v3#Component"
}
] ,
"http://sbols.org/v3#hasNamespace" : [ {
"type" : "uri" ,
"value" : "urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9"
"value" : "urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb"
}
] ,
"http://sbols.org/v3#name" : [ {
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12 changes: 6 additions & 6 deletions libSBOLj3/output/entity/component_urn_uri/component_urn_uri.ttl
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@@ -1,16 +1,16 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96>
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58>
a sbol:Component ;
sbol:hasNamespace <urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9> ;
sbol:hasNamespace <urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb> ;
sbol:name "TetR" ;
sbol:type SBO:0000252 .
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://sbols.org/v3#hasNamespace> <urn:uuid:50c93ae6-96d7-4145-9673-c3acd68182a9> .
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:d713be1d-3c4c-48b6-a0a3-669f13ee2d96> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#hasNamespace> <urn:uuid:6752ab9a-9626-464c-aec5-52bf4a89a5fb> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#name> "TetR" .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000252> .
<urn:uuid:5a9913bd-8b15-492c-a5d5-707cbc3c7c58> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Component> .
8 changes: 4 additions & 4 deletions libSBOLj3/output/entity/implementation/implementation.ttl
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@@ -1,13 +1,13 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

:impl1 a sbol:Implementation ;
sbol:built :TetR_protein ;
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8 changes: 4 additions & 4 deletions libSBOLj3/output/entity/interface/interface.ttl
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@@ -1,13 +1,13 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

<LacI_producer/SubComponent1>
a sbol:SubComponent ;
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8 changes: 4 additions & 4 deletions libSBOLj3/output/entity/model/model.ttl
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@@ -1,13 +1,13 @@
@base <https://sbolstandard.org/examples/> .
@prefix : <https://sbolstandard.org/examples/> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix CHEBI: <https://identifiers.org/CHEBI:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix sbol: <http://sbols.org/v3#> .
@prefix EDAM: <https://identifiers.org/edam:> .
@prefix GO: <https://identifiers.org/GO:> .
@prefix SBO: <https://identifiers.org/SBO:> .
@prefix SO: <https://identifiers.org/SO:> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix om: <http://www.ontology-of-units-of-measure.org/resource/om-2/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sbol: <http://sbols.org/v3#> .

:toggle_switch a sbol:Component ;
sbol:description "Toggle Switch genetic circuit" ;
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82 changes: 82 additions & 0 deletions libSBOLj3/output/entity_addiitonal/component/component.jsonld
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@@ -0,0 +1,82 @@
{
"@graph" : [ {
"@id" : "https://synbiohub.org/public/igem/BBa_F2620",
"@type" : "sbol:Component",
"description" : "PoPS Receiver",
"displayId" : "BBa_F2620",
"hasNamespace" : "https://synbiohub.org/public/igem",
"name" : "BBa_F2620",
"role" : "SO:0000704",
"type" : "SBO:0000251"
}, {
"@id" : "https://synbiohub.org/public/igem/BBa_R0040",
"@type" : "sbol:Component",
"description" : "TetR repressible promoter",
"displayId" : "BBa_R0040",
"hasNamespace" : "https://synbiohub.org/public/igem",
"hasSequence" : "https://synbiohub.org/public/igem/BBa_R0040_Sequence1",
"name" : "pTetR",
"role" : "SO:0000167",
"type" : "SBO:0000251"
}, {
"@id" : "https://synbiohub.org/public/igem/BBa_R0040_Sequence1",
"@type" : "sbol:Sequence",
"description" : "pTetR sequence",
"displayId" : "BBa_R0040_Sequence1",
"elements" : "tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac",
"encoding" : "EDAM:format_1207",
"hasNamespace" : "https://synbiohub.org/public/igem",
"name" : "Sequence1"
}, {
"@id" : "https://synbiohub.org/public/igem/BBa_R0040_Sequence2",
"@type" : "sbol:Sequence",
"description" : "pTetR sequence",
"displayId" : "BBa_R0040_Sequence2",
"elements" : "aaaa",
"encoding" : "EDAM:format_1207",
"hasNamespace" : "https://synbiohub.org/public/igem",
"name" : "Sequence2"
} ],
"@context" : {
"role" : {
"@id" : "http://sbols.org/v3#role",
"@type" : "@id"
},
"description" : {
"@id" : "http://sbols.org/v3#description"
},
"name" : {
"@id" : "http://sbols.org/v3#name"
},
"hasNamespace" : {
"@id" : "http://sbols.org/v3#hasNamespace",
"@type" : "@id"
},
"type" : {
"@id" : "http://sbols.org/v3#type",
"@type" : "@id"
},
"displayId" : {
"@id" : "http://sbols.org/v3#displayId"
},
"hasSequence" : {
"@id" : "http://sbols.org/v3#hasSequence",
"@type" : "@id"
},
"encoding" : {
"@id" : "http://sbols.org/v3#encoding",
"@type" : "@id"
},
"elements" : {
"@id" : "http://sbols.org/v3#elements"
},
"SBO" : "https://identifiers.org/SBO:",
"CHEBI" : "https://identifiers.org/CHEBI:",
"GO" : "https://identifiers.org/GO:",
"sbol" : "http://sbols.org/v3#",
"EDAM" : "https://identifiers.org/edam:",
"SO" : "https://identifiers.org/SO:",
"prov" : "http://www.w3.org/ns/prov#",
"om" : "http://www.ontology-of-units-of-measure.org/resource/om-2/"
}
}
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