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Fix series detection for some bioformats files #1365

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merged 1 commit into from
Nov 9, 2023
Merged

Fix series detection for some bioformats files #1365

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@

### Bug Fixes
- Default to "None" for the DICOM assetstore limit ([#1359](../../pull/1359))
- Fix series detection for some bioformats files ([#1365](../../pull/1365))

## 1.26.0

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4 changes: 2 additions & 2 deletions sources/bioformats/large_image_source_bioformats/__init__.py
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Expand Up @@ -99,7 +99,7 @@ def _reduceLogging():
'org/slf4j/LoggerFactory', 'getLogger',
'(Ljava/lang/String;)Lorg/slf4j/Logger;', rootLoggerName)
logLevel = javabridge.get_static_field(
'ch/qos/logback/classic/Level', 'WARN', 'Lch/qos/logback/classic/Level;')
'ch/qos/logback/classic/Level', 'ERROR', 'Lch/qos/logback/classic/Level;')
javabridge.call(rootLogger, 'setLevel', '(Lch/qos/logback/classic/Level;)V', logLevel)
except Exception:
pass
Expand Down Expand Up @@ -352,7 +352,7 @@ def _getSeriesStarts(self, rdr): # noqa
for idx in range(1, self._metadata['seriesCount']):
rdr.setSeries(idx)
if (rdr.getSizeX() == self._metadata['sizeX'] and
rdr.getSizeY == self._metadata['sizeY']):
rdr.getSizeY() == self._metadata['sizeY']):
frameList.append([idx])
if nextSeriesNum == idx:
nextSeriesNum = idx + 1
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