Read magnification values from DICOM when reading them via bioformats #2549
Workflow file for this run
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| --- | |
| name: Docker Package | |
| on: | |
| push: | |
| tags: "*" | |
| branches: | |
| - master | |
| pull_request: | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository }} | |
| jobs: | |
| build-and-publish-base: | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' || github.event_name == 'workflow_dispatch' || ( github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name == github.repository ) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Log into the Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: token | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # Build and publish image with all sources | |
| - name: Extract metadata for the Docker image | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| - name: Build and push the Docker image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: . | |
| file: slim.Dockerfile | |
| target: all | |
| push: ${{ github.actor != 'dependabot[bot]' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| build-and-publish-targets: | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' || github.event_name == 'workflow_dispatch' || ( github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name == github.repository ) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| target: | |
| - "geo" | |
| - "jupyter" | |
| - "jupyter-geo" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Log into the Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: token | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # Build and publish image with only geospatial sources | |
| - name: Extract metadata for the geospatial Docker image | |
| id: meta_target | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| flavor: | | |
| latest=auto | |
| suffix=-${{ matrix.target }},onlatest=true | |
| - name: Build and push the geosptial Docker image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: . | |
| file: slim.Dockerfile | |
| target: ${{ matrix.target }} | |
| push: ${{ github.actor != 'dependabot[bot]' }} | |
| tags: ${{ steps.meta_target.outputs.tags }} | |
| labels: ${{ steps.meta_target.outputs.labels }} |