more on data.ipynb

geo-smart · Jul 7, 2024 · 43fe4cd · 43fe4cd
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diff --git a/book/_toc.yml b/book/_toc.yml
@@ -16,12 +16,9 @@ parts:
   chapters:
     - file: chapters/ocean_science
     - file: chapters/data
-    - file: chapters/shallowprofiler
+    - file: chapters/epipelargosy
     - file: chapters/anomaly
-    - file: chapters/anomaly2
-    - file: chapters/anomaly3
     - file: chapters/annotation
-    - file: chapters/annotation2
     - file: chapters/argo
     - file: chapters/glodap
     - file: chapters/modis

diff --git a/book/chapters/anomaly.ipynb → book/chapters/anomaly_and_coincidence.ipynb b/book/chapters/anomaly.ipynb → book/chapters/anomaly_and_coincidence.ipynb
@@ -9,7 +9,7 @@
     "\n",
     "\n",
     "\n",
-    "# Anomaly\n",
+    "# Anomaly and Coincidence\n",
     "\n",
     "\n",
     "This notebook generates anomaly metadata for an OOI RCA shallow profiler, typically scanning a time series lasting\n",
@@ -822,7 +822,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.3"
+   "version": "3.11.4"
   }
  },
  "nbformat": 4,

diff --git a/book/chapters/data.ipynb b/book/chapters/data.ipynb
diff --git a/book/chapters/data/tmp/osb_temp_jan_2022.nc → .../sensors/osb/zarr/temperature_jan_2022.nc b/book/chapters/data/tmp/osb_temp_jan_2022.nc → .../sensors/osb/zarr/temperature_jan_2022.nc
diff --git a/book/chapters/data2.ipynb b/book/chapters/data2.ipynb
diff --git a/book/chapters/shallowprofiler.ipynb → book/chapters/epipelargosy.ipynb b/book/chapters/shallowprofiler.ipynb → book/chapters/epipelargosy.ipynb
@@ -8,7 +8,7 @@
     "[Jupyter Book](https://geo-smart.github.io/oceanography/intro.html) and [GitHub repo](https://github.com/geo-smart/oceanography).\n",
     "\n",
     "\n",
-    "# Shallow Profiler\n",
+    "# Epipelargosy\n",
     "\n",
     "\n",
     "> Wavering between the profit and the loss /\n",

diff --git a/book/chapters/ocean_science.ipynb b/book/chapters/ocean_science.ipynb
@@ -7,6 +7,11 @@
     "[Jupyter Book](https://geo-smart.github.io/oceanography/intro.html) and [GitHub repo](https://github.com/geo-smart/oceanography).\n",
     "\n",
     "\n",
+    "> Author's note: This notebook establishes a science basis that the subsequent chapters will\n",
+    "address (by dint of laborious data wrangling). The chapter concludes with a list of subsequent\n",
+    "grouped chapters to establish a roadmap.\n",
+    "\n",
+    "\n",
     "# Ocean Science\n",
     "\n",
     "\n",
@@ -29,20 +34,16 @@
     "The purpose of this Jupyter Book is to present research ideas in oceanography relative \n",
     "to observational data from sensors. The underlying intent is to provide a reproducible \n",
     "methodology; but this tends to take up all the oxygen in the room. So before diving in\n",
-    "let us frame out the science, starting with an ambitious question:<br><br><br>"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "${\\Large \\textrm{How stable is the epipelagic ocean?}}$"
+    "let us frame out the science, starting with an ambitious question:\n",
+    "<br><br><br>"
    ]
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "${\\Large \\textrm{How stable is the epipelagic ocean?}}$\n",
+    "\n",
     "<br>\n",
     "\n",
     "### The *epipelagic ocean* defined\n",
@@ -121,7 +122,7 @@
     "shape, and second that they occasionally exhibit anomalous structure. Anomalies are interesting\n",
     "for a single sensor type say like temperature. However an anomaly that is present and persistent \n",
     "across multiple sensor types (say temperature, salinity and Chlorophyll-A fluorescence) is\n",
-    "indicating ocean structure on some physical and temporal scale. \n"
+    "indicating ocean structure on some physical and temporal scale. "
    ]
   },
   {
@@ -131,13 +132,12 @@
     "## Agenda\n",
     "\n",
     "\n",
-    "This Geo-SMART Jupyter Book will proceed chapter-by-chapter to cover the following agenda:\n",
     "\n",
     "- Getting our feet wet\n",
     "    - Ocean Science (this chapter): Establish a heirarchy of research questions and terminology\n",
-    "    - Shallow Profiler: Using a particular site and month-duration time frame: A first look at profile data\n",
-    "    - Data: Describe the baseline data access path and an alternative 'zarr' path\n",
-    "    - Anomaly: \n",
+    "    - Data: Structure, necessity of profile metadata, sensors-to-measurements\n",
+    "    - Epipelargosy: A sense of the structure of the epipelagic water column\n",
+    "    - Anomaly and Coincidence: \n",
     "    - Annotation:\n",
     "- Other observation systems\n",
     "    - ARGO:\n",
@@ -629,7 +629,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.3"
+   "version": "3.11.4"
   }
  },
  "nbformat": 4,