Do not merge: Modify server

.gitignore

@@ -7,8 +7,10 @@
 #Ignore csv files in the inputs folder
 simple/*.csv
 RFR/inputs_gcc/*.csv
-RFR/inputs_weather/*/*.csv
+RFR/inputs_weather/**/*.csv
 RFR/PEG_RFR/**/*.csv
 RFR/PEG_RFR0/**/*.csv
 RFR/PEG_RFR2/**/*.csv
 RFR/PEG_FUSION_0/**/*.csv
+RFR/PEG_FUSION_1/**/*.csv
+

RFR/06_submit_fusion.R

@@ -66,6 +66,5 @@ for(v in version){
              "AWS_S3_ENDPOINT" = "ecoforecast.org")
 
   aws.s3::put_object(file = file.path(".", v, "submissions", pred_filename), 
-                     bucket = "submissions")
-
+                     bucket = "submissions") 
 }

RFR/forecast_gcc.sh

@@ -5,4 +5,5 @@ Rscript 01_pull_gcc_weather.R
 # python3 03_PEG_RFR_gcc_predictions_with_interpolation.py
 # python3 04_PEG_RFR2_gcc_predictions_with_weather_variables.py
 python3 05_PEG_FUSION_0_future_predictions.py
-Rscript 06_submit_fusion.R
+python3 05_PEG_FUSION_1_future_predictions.py
+Rscript 06_submit_fusion.R

RFR/test_submit.R

@@ -0,0 +1,16 @@
+.libPaths(c("/home/kristinariemer/r_libs/", .libPaths()))
+### Submission script for the Fall 2021 EFI Challenge: Phenology
+# remotes::install_github("eco4cast/neon4cast")
+library(readr)
+library(tidyr)
+library(dplyr)
+
+# loop to read, clean, score, validate, and submit prediction
+version <- c("PEG_FUSION_0", "PEG_FUSION_1")
+
+# Submit
+Sys.setenv("AWS_DEFAULT_REGION" = "data",
+           "AWS_S3_ENDPOINT" = "ecoforecast.org")
+
+aws.s3::put_object(file = file.path(".", version[1], "submissions", "phenology-2022-05-05-PEG_FUSION_0.csv"),
+                   bucket = "submissions")