Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

SGD import models 20240124 #3

Merged
merged 2 commits into from
Jan 25, 2024
Merged

SGD import models 20240124 #3

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
88589a8
SGD import models 20240124
dustine32 Jan 25, 2024
26c2afb
GPAD altering scripts and inputs
dustine32 Jan 25, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
The table of contents is too big for display.
Diff view
Diff view
  •  
  •  
  •  
The diff you're trying to view is too large. We only load the first 3000 changed files.
544 changes: 272 additions & 272 deletions models/SGD_S000000001.ttl
View file
Open in desktop

Large diffs are not rendered by default.

506 changes: 253 additions & 253 deletions models/SGD_S000000002.ttl
View file
Open in desktop

Large diffs are not rendered by default.

476 changes: 238 additions & 238 deletions models/SGD_S000000003.ttl
View file
Open in desktop

Large diffs are not rendered by default.

1,716 changes: 839 additions & 877 deletions models/SGD_S000000004.ttl
View file
Open in desktop

Large diffs are not rendered by default.

363 changes: 181 additions & 182 deletions models/SGD_S000000005.ttl
View file
Open in desktop

Large diffs are not rendered by default.

350 changes: 175 additions & 175 deletions models/SGD_S000000006.ttl
View file
Open in desktop

Large diffs are not rendered by default.

706 changes: 300 additions & 406 deletions models/SGD_S000000007.ttl
View file
Open in desktop

Large diffs are not rendered by default.

716 changes: 358 additions & 358 deletions models/SGD_S000000008.ttl
View file
Open in desktop

Large diffs are not rendered by default.

340 changes: 170 additions & 170 deletions models/SGD_S000000009.ttl
View file
Open in desktop

Large diffs are not rendered by default.

536 changes: 268 additions & 268 deletions models/SGD_S000000010.ttl
View file
Open in desktop

Large diffs are not rendered by default.

2,213 changes: 1,106 additions & 1,107 deletions models/SGD_S000000011.ttl
View file
Open in desktop

Large diffs are not rendered by default.

202 changes: 101 additions & 101 deletions models/SGD_S000000012.ttl
View file
Open in desktop

Large diffs are not rendered by default.

704 changes: 352 additions & 352 deletions models/SGD_S000000013.ttl
View file
Open in desktop

Large diffs are not rendered by default.

516 changes: 258 additions & 258 deletions models/SGD_S000000014.ttl
View file
Open in desktop

Large diffs are not rendered by default.

326 changes: 163 additions & 163 deletions models/SGD_S000000015.ttl
View file
Open in desktop

Large diffs are not rendered by default.

398 changes: 199 additions & 199 deletions models/SGD_S000000016.ttl
View file
Open in desktop

Large diffs are not rendered by default.

1,096 changes: 548 additions & 548 deletions models/SGD_S000000017.ttl
View file
Open in desktop

Large diffs are not rendered by default.

144 changes: 72 additions & 72 deletions models/SGD_S000000018.ttl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,14 +3,14 @@
@prefix SGD: <http://identifiers.org/sgd/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix ns1: <http://geneontology.org/lego/> .
@prefix ns2: <http://purl.org/pav/> .
@prefix ns1: <http://purl.org/pav/> .
@prefix ns2: <http://geneontology.org/lego/> .
@prefix ns3: <https://w3id.org/biolink/vocab/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .

ns1:evidence a owl:AnnotationProperty .
ns2:evidence a owl:AnnotationProperty .

<http://geneontology.org/lego/hint/layout/x> a owl:AnnotationProperty .

Expand All @@ -26,164 +26,164 @@ dct:created a owl:AnnotationProperty .

dct:dateAccepted a owl:AnnotationProperty .

ns2:providedBy a owl:AnnotationProperty .
ns1:providedBy a owl:AnnotationProperty .

<http://model.geneontology.org/SGD_S000000018> a owl:Ontology ;
ns1:modelstate "production" ;
ns2:modelstate "production" ;
dc:contributor "https://orcid.org/0000-0002-3726-7441",
"https://orcid.org/0000-0002-7010-0264",
"https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dc:title "ATS1 (SGD:S000000018)" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" ;
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" ;
owl:versionIRI <http://model.geneontology.org/SGD_S000000018> ;
ns3:in_taxon obo:NCBITaxon_559292 .

<http://model.geneontology.org/SGD_S000000018/1cb366d7-a9c8-46cd-a116-eb134e6f42f0> a ECO:0000314,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0002-3726-7441" ;
dc:date "2013-08-07" ;
dc:source "PMID:18466297" ;
dct:created "2013-08-07" ;
ns2:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/51702c44-bc0b-402c-98ee-03be672cbd89> a ECO:0000315,
<http://model.geneontology.org/SGD_S000000018/651e8383-eafd-41f0-a774-4acd2e2caddd> a ECO:0000315,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dc:source "PMID:18755837" ;
dct:created "2013-08-07" ;
ns2:providedBy "http://www.yeastgenome.org" .
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/b5b4779f-dffe-42fb-9d0d-675e94cafeb7> a ECO:0000315,
<http://model.geneontology.org/SGD_S000000018/8e67dcef-a136-45e1-a4e9-de1c2da25138> a ECO:0000314,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:contributor "https://orcid.org/0000-0002-3726-7441" ;
dc:date "2013-08-07" ;
dc:source "PMID:18755837" ;
dc:source "PMID:18466297" ;
dct:created "2013-08-07" ;
ns2:providedBy "http://www.yeastgenome.org" .
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/b6c7aea2-c435-48b8-ba2f-7e0937b7c23a> a GO:0003674,
<http://model.geneontology.org/SGD_S000000018/93bde249-19f0-42bf-bdc3-9bd6e86d3d60> a ECO:0000307,
owl:NamedIndividual ;
obo:RO_0002333 <http://model.geneontology.org/SGD_S000000018/b8b85cca-3ae0-4d41-8ab1-687e1e7b9f74> ;
dc:contributor "https://orcid.org/0000-0002-7010-0264" ;
dc:date "2013-08-07" ;
dc:source "GO_REF:0000015" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/c1bd561c-ba4e-4236-afc8-51328466707e> a ECO:0000307,
<http://model.geneontology.org/SGD_S000000018/bc4cac09-8c3d-4790-8233-3b67cc50b53b> a GO:0003674,
owl:NamedIndividual ;
obo:RO_0002333 <http://model.geneontology.org/SGD_S000000018/e8eb15fe-d8fc-4ff5-9cb0-31e5be930904> ;
dc:contributor "https://orcid.org/0000-0002-7010-0264" ;
dc:date "2013-08-07" ;
dc:source "GO_REF:0000015" ;
dct:created "2013-08-07" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/f988d1a1-316c-422e-a2a2-2f39fe54ccdc> a SGD:S000000018,
<http://model.geneontology.org/SGD_S000000018/c42c9f56-f29c-4808-b767-06b3d4df5c80> a SGD:S000000018,
owl:NamedIndividual ;
obo:RO_0001025 <http://model.geneontology.org/SGD_S000000018/ee671586-a52c-4b84-be66-15d455361469> ;
obo:RO_0001025 <http://model.geneontology.org/SGD_S000000018/2565a020-7c7f-42e8-9e3d-68078019693b> ;
dc:contributor "https://orcid.org/0000-0002-3726-7441" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/fde7c6fc-9a26-42f8-9152-6b6cc0bb4ac3> a ECO:0000315,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dc:source "PMID:18755837" ;
dct:created "2013-08-07" ;
ns1:providedBy "http://www.yeastgenome.org" .

obo:BFO_0000050 a owl:ObjectProperty .

obo:RO_0001025 a owl:ObjectProperty .

<http://model.geneontology.org/SGD_S000000018/6f47a553-14f5-412f-896f-14ee76f93e00> a SGD:S000000018,
<http://model.geneontology.org/SGD_S000000018/03a4da84-fb13-4e77-88b5-585761d4ea0a> a GO:0003674,
owl:NamedIndividual ;
obo:BFO_0000050 <http://model.geneontology.org/SGD_S000000018/14511e90-4acc-4235-8870-5dbc17915170> ;
obo:RO_0002333 <http://model.geneontology.org/SGD_S000000018/bd3942a7-114a-45a2-ab70-b2bee640353e> ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/7f973cc6-86fb-4895-9c46-2b071e8bed66> a GO:0003674,
<http://model.geneontology.org/SGD_S000000018/14511e90-4acc-4235-8870-5dbc17915170> a GO:0002098,
owl:NamedIndividual ;
obo:BFO_0000050 <http://model.geneontology.org/SGD_S000000018/f33bf09c-a87c-43cd-b206-c6b41109e1e3> ;
obo:RO_0002333 <http://model.geneontology.org/SGD_S000000018/6f47a553-14f5-412f-896f-14ee76f93e00> ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/b8b85cca-3ae0-4d41-8ab1-687e1e7b9f74> a SGD:S000000018,
<http://model.geneontology.org/SGD_S000000018/2565a020-7c7f-42e8-9e3d-68078019693b> a GO:0005737,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0002-7010-0264" ;
dc:contributor "https://orcid.org/0000-0002-3726-7441" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/ee671586-a52c-4b84-be66-15d455361469> a GO:0005737,
<http://model.geneontology.org/SGD_S000000018/bd3942a7-114a-45a2-ab70-b2bee640353e> a SGD:S000000018,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0002-3726-7441" ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

<http://model.geneontology.org/SGD_S000000018/f33bf09c-a87c-43cd-b206-c6b41109e1e3> a GO:0002098,
<http://model.geneontology.org/SGD_S000000018/e8eb15fe-d8fc-4ff5-9cb0-31e5be930904> a SGD:S000000018,
owl:NamedIndividual ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:contributor "https://orcid.org/0000-0002-7010-0264" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" .
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" .

obo:RO_0002333 a owl:ObjectProperty .

[] a owl:Axiom ;
ns1:evidence <http://model.geneontology.org/SGD_S000000018/c1bd561c-ba4e-4236-afc8-51328466707e> ;
ns2:evidence <http://model.geneontology.org/SGD_S000000018/93bde249-19f0-42bf-bdc3-9bd6e86d3d60> ;
dc:contributor "https://orcid.org/0000-0002-7010-0264" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" ;
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" ;
rdfs:comment "SGD:S000000018 RO:0002327 GO:0003674 GO_REF:0000015 ECO:0000307 2001-01-19 SGD id=GOA:2113655405|contributor-id=https://orcid.org/0000-0002-7010-0264|creation-date=2013-08-07T08:39:22|modification-date=2013-08-07T08:39:22" ;
owl:annotatedProperty obo:RO_0002333 ;
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/b6c7aea2-c435-48b8-ba2f-7e0937b7c23a> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/b8b85cca-3ae0-4d41-8ab1-687e1e7b9f74> .
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/bc4cac09-8c3d-4790-8233-3b67cc50b53b> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/e8eb15fe-d8fc-4ff5-9cb0-31e5be930904> .

[] a owl:Axiom ;
ns1:evidence <http://model.geneontology.org/SGD_S000000018/b5b4779f-dffe-42fb-9d0d-675e94cafeb7> ;
ns2:evidence <http://model.geneontology.org/SGD_S000000018/fde7c6fc-9a26-42f8-9152-6b6cc0bb4ac3> ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" ;
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" ;
rdfs:comment "SGD:S000000018 RO:0002331 GO:0002098 PMID:18755837 ECO:0000315 2009-03-11 SGD id=GOA:2113631997|contributor-id=https://orcid.org/0000-0003-2468-9933|creation-date=2013-08-07T08:37:48|modification-date=2013-08-07T08:37:48" ;
owl:annotatedProperty obo:RO_0002333 ;
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/7f973cc6-86fb-4895-9c46-2b071e8bed66> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/6f47a553-14f5-412f-896f-14ee76f93e00> .
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/03a4da84-fb13-4e77-88b5-585761d4ea0a> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/bd3942a7-114a-45a2-ab70-b2bee640353e> .

[] a owl:Axiom ;
ns1:evidence <http://model.geneontology.org/SGD_S000000018/51702c44-bc0b-402c-98ee-03be672cbd89> ;
ns2:evidence <http://model.geneontology.org/SGD_S000000018/651e8383-eafd-41f0-a774-4acd2e2caddd> ;
dc:contributor "https://orcid.org/0000-0003-2468-9933" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" ;
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" ;
rdfs:comment "SGD:S000000018 RO:0002331 GO:0002098 PMID:18755837 ECO:0000315 2009-03-11 SGD id=GOA:2113631997|contributor-id=https://orcid.org/0000-0003-2468-9933|creation-date=2013-08-07T08:37:48|modification-date=2013-08-07T08:37:48" ;
owl:annotatedProperty obo:BFO_0000050 ;
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/7f973cc6-86fb-4895-9c46-2b071e8bed66> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/f33bf09c-a87c-43cd-b206-c6b41109e1e3> .
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/03a4da84-fb13-4e77-88b5-585761d4ea0a> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/14511e90-4acc-4235-8870-5dbc17915170> .

[] a owl:Axiom ;
ns1:evidence <http://model.geneontology.org/SGD_S000000018/1cb366d7-a9c8-46cd-a116-eb134e6f42f0> ;
ns2:evidence <http://model.geneontology.org/SGD_S000000018/8e67dcef-a136-45e1-a4e9-de1c2da25138> ;
dc:contributor "https://orcid.org/0000-0002-3726-7441" ;
dc:date "2013-08-07" ;
dct:created "2013-08-07" ;
dct:dateAccepted "2023-06-01" ;
ns2:providedBy "http://www.yeastgenome.org" ;
dct:dateAccepted "2024-01-24" ;
ns1:providedBy "http://www.yeastgenome.org" ;
rdfs:comment "SGD:S000000018 RO:0001025 GO:0005737 PMID:18466297 ECO:0000314 2008-08-25 SGD id=GOA:2113642995|contributor-id=https://orcid.org/0000-0002-3726-7441|creation-date=2013-08-07T08:38:35|modification-date=2013-08-07T08:38:35" ;
owl:annotatedProperty obo:RO_0001025 ;
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/f988d1a1-316c-422e-a2a2-2f39fe54ccdc> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/ee671586-a52c-4b84-be66-15d455361469> .
owl:annotatedSource <http://model.geneontology.org/SGD_S000000018/c42c9f56-f29c-4808-b767-06b3d4df5c80> ;
owl:annotatedTarget <http://model.geneontology.org/SGD_S000000018/2565a020-7c7f-42e8-9e3d-68078019693b> .

Loading